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hhsuite 3.3.0+ds-4
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  • size: 16,076 kB
  • sloc: cpp: 24,689; perl: 5,022; python: 3,017; ansic: 2,556; sh: 110; makefile: 109
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Source: hhsuite
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Laszlo Kajan <lkajan@debian.org>,
           Andreas Tille <tille@debian.org>,
           Sascha Steinbiss <satta@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
               libsimde-dev (>= 0.6.0-2),
               cmake,
               imagemagick,
               help2man
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/hhsuite
Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git
Homepage: https://toolkit.tuebingen.mpg.de/
Rules-Requires-Root: no

Package: hhsuite
Architecture: any
Built-Using: ${simde:Built-Using}
Depends: ${shlibs:Depends},
         ${misc:Depends},
         ${perl:Depends},
         hhsuite-data (= ${source:Version}),
         python3
Conflicts: ffindex
Description: sensitive protein sequence searching based on HMM-HMM alignment
 HH-suite is an open-source software package for sensitive protein sequence
 searching based on the pairwise alignment of hidden Markov models (HMMs).
 .
 This package contains HHsearch and HHblits among other programs and utilities.
 .
 HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
 and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
 proteins. HHsearch is often used for protein structure prediction to detect
 homologous templates and to build highly accurate query-template pairwise
 alignments for homology modeling.
 .
 HHblits can build high-quality MSAs starting from single sequences or from
 MSAs. It transforms these into a query HMM and, using an iterative search
 strategy, adds significantly similar sequences from the previous search to
 the updated query HMM for the next search iteration. Compared to PSI-BLAST,
 HHblits is faster, up to twice as sensitive and produces more accurate
 alignments.

Package: hhsuite-data
Architecture: all
Multi-Arch: foreign
Depends: ${misc:Depends}
Description: sensitive protein sequence searching based on HMM-HMM alignment (data)
 HH-suite is an open-source software package for sensitive protein sequence
 searching based on the pairwise alignment of hidden Markov models (HMMs).
 .
 This package contains architecture independent scripts and data files.