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Source: hinge
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
cmake,
libspdlog-dev,
libboost-dev,
libboost-graph-dev,
libhdf5-dev,
zlib1g-dev,
pandoc,
# Run-Time-Depends:
# (to prevent building where not installable)
python3,
daligner,
dazzdb,
dascrubber,
python3-numpy,
python3-ujson,
python3-colormap,
python3-pbcore,
python3-networkx,
python3-matplotlib
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/hinge
Vcs-Git: https://salsa.debian.org/med-team/hinge.git
Homepage: https://github.com/HingeAssembler/HINGE
Rules-Requires-Root: no
Package: hinge
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
python3,
daligner,
dazzdb,
dascrubber,
python3-numpy,
python3-ujson,
python3-colormap,
python3-pbcore,
python3-networkx,
python3-matplotlib
Description: long read genome assembler based on hinging
HINGE is a genome assembler that seeks to achieve optimal repeat resolution
by distinguishing repeats that can be resolved given the data from those that
cannot. This is accomplished by adding “hinges” to reads for constructing an
overlap graph where only unresolvable repeats are merged. As a result, HINGE
combines the error resilience of overlap-based assemblers with
repeat-resolution capabilities of de Bruijn graph assemblers.
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