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hisat2 (2.2.1-4) unstable; urgency=medium
* Team upload
* Fix watch file
* Standards-Version: 4.6.1 (routine-update)
* Update lintian-overrides
-- Andreas Tille <tille@debian.org> Fri, 14 Oct 2022 20:18:28 +0200
hisat2 (2.2.1-3) unstable; urgency=medium
* Team upload.
* Fix watchfile to detect new versions on github (routine-update)
* Standards-Version: 4.6.0 (routine-update)
* Fix debian/source/lintian-overrides
-- Andreas Tille <tille@debian.org> Tue, 28 Sep 2021 10:35:43 +0200
hisat2 (2.2.1-2) unstable; urgency=medium
* debian/patches/riscv5: fix compilation on riscv5
* Standards-Version: 4.5.1 (routine-update)
-- Michael R. Crusoe <crusoe@debian.org> Wed, 27 Jan 2021 17:34:32 +0100
hisat2 (2.2.1-1) unstable; urgency=medium
[ Steffen Moeller ]
* Team upload.
* New upstream version
* debhelper-compat 13 (routine-update)
[ Michael R. Crusoe ]
* Refresh the patches
-- Michael R. Crusoe <crusoe@debian.org> Tue, 11 Aug 2020 13:42:31 +0200
hisat2 (2.2.0-2) unstable; urgency=medium
* Fix simde patch for ppc64el
* Fix missing $(LDFLAGS) in hardening patch
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 06 May 2020 20:48:11 +0200
hisat2 (2.2.0-1) unstable; urgency=medium
* Use the libsimde-dev package instead of our code copy.
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Upstream moved to GitHub
* Use the HISAT2 citation instead of the HISAT paper
* New upstream version
* Freshen the patches
* Added patch to fix the manual path
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 19 Apr 2020 23:04:26 +0200
hisat2 (2.1.0-4) unstable; urgency=medium
* Integrate recent changes with the new python3-hisat2 package.
* Made it easier to cross build the package
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 11 Feb 2020 18:22:17 +0100
hisat2 (2.1.0-2nopython3hisat3) unstable; urgency=medium
* armhf armel ppc64el s390x: add -Wno-narrowing
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 04 Jan 2020 22:52:02 +0100
hisat2 (2.1.0-2nopython3hisat2) unstable; urgency=medium
[ Saira Hussain ]
* Add autopkgtest
[ Andreas Tille ]
* Install hisat2_extract_splice_sites.py
* Recommends: bcftools, samtools
[ Michael R. Crusoe ]
* Skip the new python3-hisat2 package while we wait for 2.1.0-3 to go
through the NEW queue.
* Include SIMD everywhere headers and enable building on all architectures.
* debhelper-compat 12
* Remove trailing whitespace in debian/control
* Ported Python scripts to Python 3 using 2to3. Closes: #943125
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 30 Dec 2019 20:08:00 +0100
hisat2 (2.1.0-2) unstable; urgency=medium
* Team upload.
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Fix wrong path for Perl interpreter
* Do not parse d/changelog
-- Andreas Tille <tille@debian.org> Mon, 24 Sep 2018 11:52:06 +0200
hisat2 (2.1.0-1) unstable; urgency=medium
* Team upload
[ Steffen Moeller ]
* debian/upstream/metadata: Added ref to OMICtools
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.1.0 (no changes needed)
-- Andreas Tille <tille@debian.org> Mon, 04 Sep 2017 14:49:40 +0200
hisat2 (2.0.5-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Architecture: amd64 kfreebsd-amd64
Closes: #834862, #834863
* d/watch:
- version=4
- xz compression
* debhelper 10
-- Andreas Tille <tille@debian.org> Fri, 09 Dec 2016 13:45:26 +0100
hisat2 (2.0.4-2) unstable; urgency=medium
* Team upload.
* Fix Vcs-Git.
* Fix build on kFreeBSD. Thanks to Steven Chamberlain for the patch.
Closes: #834864
* Make build reproducible.
- Set C(XX,PP)FLAGS to make sure -fdebug-prefix-map is set.
- Set TZ=UTC.
* Remove arch-restrictive compiler flags.
Closes: #834862
-- Sascha Steinbiss <satta@debian.org> Thu, 25 Aug 2016 15:46:42 +0000
hisat2 (2.0.4-1) unstable; urgency=medium
* Initial release. (Closes: #834592)
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 17 Aug 2016 05:15:40 -0700
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