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export LC_ALL=C.UTF-8
export TZ=UTC
include /usr/share/dpkg/default.mk
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
export DEB_CFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
export DEB_CXXFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
ifneq (,$(filter arm64 armhf armel ppc64el s390x,$(DEB_HOST_ARCH)))
export DEB_CFLAGS_MAINT_APPEND += -Wno-narrowing
export DEB_CXXFLAGS_MAINT_APPEND += -Wno-narrowing
endif
ifneq (,$(filter amd64,$(DEB_HOST_ARCH)))
export DEB_CFLAGS_MAINT_APPEND += -DPOPCNT_CAPABILITY
export DEB_CXXFLAGS_MAINT_APPEND += -DPOPCNT_CAPABILITY
endif
DATE=$(shell date --date=@$(SOURCE_DATE_EPOCH) '+%d %B %Y')
%:
dh $@
override_dh_auto_build:
ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS) $(DEB_BUILD_PROFILES)))
dh_auto_build -- BUILD_HOST='Debian' BUILD_TIME="$(DATE)" all doc
help2man ./hisat2 --no-info --name \
'graph-based alignment of short nucleotide reads to many genomes, wrapper script' \
> debian/hisat2.1
help2man ./hisat2-align-l --name 'HISAT2 graph-based alignment of short nucleotide reads to many genomes, large index binary' \
--no-info > debian/hisat2-align-l.1
help2man ./hisat2-align-s --name 'HISAT2 graph-based alignment of short nucleotide reads to many genomes, small index binary' \
--no-info > debian/hisat2-align-s.1
help2man ./hisat2-build --name 'HISAT2 indexer, wrapper script' \
--no-info > debian/hisat2-build.1
help2man ./hisat2-build-l --name 'HISAT2 indexer, large index binary' \
--no-info > debian/hisat2-build-l.1
help2man ./hisat2-build-s --name 'HISAT2 indexer, small index binary' \
--no-info > debian/hisat2-build-s.1
help2man ./hisat2-inspect --name 'HISAT2 index inspector, wrapper script' \
--no-info > debian/hisat2-inspect.1
help2man ./hisat2-inspect-l --name 'HISAT2 index inspector, large index binary' \
--no-info > debian/hisat2-inspect-l.1
help2man ./hisat2-inspect-s --name 'HISAT2 index inspector, small index binary' \
--no-info > debian/hisat2-inspect-s.1
else
dh_auto_build -- BUILD_HOST='Debian' BUILD_TIME="$(DATE)" all
endif
override_dh_install:
dh_install
for pl in `grep -Rl '
sed -i '1s?^
done
override_dh_gencontrol:
dh_gencontrol -- -Vsimde:Built-Using="$(shell dpkg-query -f '$${source:Package} (= $${source:Version}), ' -W "libsimde-dev")"
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