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<div class="block">
<h2>Funding</h2>
<br>
<div style="font-size: 0.8em">
This work was supported in part by the National Human Genome Research Institute under grants R01-HG006102 and R01-HG006677,
and NIH grants R01-LM06845 and R01-GM083873 and NSF grant CCF-0347992 to Steven L. Salzberg
and by the Cancer Prevention Research Institute of Texas under grant RR170068 and NIH grant R01-GM135341 to Daehwan Kim
</div>
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<div class="block">
<h2>Getting Help</h2>
<br>
Please use <a href="mailto:hisat2.genomics@gmail.com">hisat2.genomics@gmail.com</a> for private communications only. Please do not email technical questions to HISAT2 contributors directly.
</div>
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<h2>Publications</h2>
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<ul>
<li>Kim, D., Paggi, J.M., Park, C. <i>et al.</i> <a class="publication" href="https://doi.org/10.1038/s41587-019-0201-4">Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.</a> <a class="publication" href="https://www.nature.com/nbt/"><i>Nat Biotechnol</i></a> <b>37</b>, 907–915 (2019).</li>
<li>Kim D, Langmead B and Salzberg SL. <a class="publication" href="https://doi.org/10.1038/nmeth.3317">HISAT: a fast spliced aligner with low memory requirements.</a> <a class="publication" href="https://www.nature.com/nmeth/"><i>Nature Methods</i></a> 2015</li>
<li>Pertea M, Kim D, Pertea G, Leek JT and Salzberg SL. <a class="publication" href="https://doi.org/10.1038/nprot.2016.095">Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.</a> <a class="publication" href="https://www.nature.com/nprot/"><i>Nature Protocols</i></a> 2016</li>
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