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HMMER3/e [3.0 | March 2010]
NAME PSE
LENG 17
MAXL 72
ALPH DNA
RF yes
CONS yes
CS yes
MAP yes
DATE Thu Jun 16 11:48:53 2011
NSEQ 20
EFFN 20.000000
CKSUM 2589846231
STATS LOCAL MSV -6.1913 0.76142
STATS LOCAL VITERBI -6.4257 0.76142
STATS LOCAL FORWARD -2.7613 0.76142
HMM A C G T
m->m m->i m->d i->m i->i d->m d->d
COMPO 0.98363 1.57656 2.60145 1.06364
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 0.00000 *
1 4.63594 4.36328 1.87494 0.19334 1 t x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
2 0.99589 3.61057 0.64655 2.52921 2 g x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
3 0.19493 4.44730 4.81228 1.84982 3 a x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
4 5.10685 0.02173 5.27971 4.57065 4 C x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
5 5.10685 0.02173 5.27971 4.57065 5 C x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
6 5.10685 0.02173 5.27971 4.57065 6 C x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
7 0.00946 6.09180 5.39984 5.93846 7 A x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
8 5.18007 4.77052 5.30682 0.01925 8 T x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
9 1.14540 1.77945 2.32761 0.87793 9 t x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
10 0.14385 5.63736 2.06991 5.46746 10 a x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
11 0.11263 5.71406 2.30920 5.55227 11 a x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
12 1.68342 1.78504 3.41886 0.48821 12 t x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
13 0.39479 4.16193 4.46740 1.20690 13 a x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
14 1.14371 2.25120 2.34691 0.73308 14 t x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
15 5.18007 4.77052 5.30682 0.01925 15 T x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
16 1.86864 4.23580 4.72896 0.19557 16 t x .
1.38629 1.38629 1.38629 1.38629
0.00905 5.40268 5.40268 1.46634 0.26236 1.09861 0.40547
17 0.25900 4.32667 4.67013 1.58185 17 a x .
1.38629 1.38629 1.38629 1.38629
0.00454 5.39816 * 1.46634 0.26236 0.00000 *
//
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