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top_srcdir = @top_srcdir@
srcdir = @srcdir@
VPATH = @srcdir@
SHELL = /bin/sh
# Installation targets
#
prefix = @prefix@
exec_prefix = @exec_prefix@
datarootdir = @datarootdir@
bindir = @bindir@
libdir = @libdir@
includedir = @includedir@
mandir = @mandir@
docdir = @docdir@
pdfdir = @pdfdir@
mandir = @mandir@
man1dir = ${mandir}/man1
man1ext = .1
HMMER_VERSION = @HMMER_VERSION@
HMMER_DATE = "@HMMER_DATE@"
HMMER_COPYRIGHT = "@HMMER_COPYRIGHT@"
INSTALL = @INSTALL@
RMAN = rman
RMANPROCESS = ${top_srcdir}/easel/devkit/rmanprocess.py
# beautification magic stolen from git
QUIET_SUBDIR0 = +${MAKE} -C #space separator after -c
QUIET_SUBDIR1 =
ifndef V
QUIET_SUBDIR0 = +@subdir=
QUIET_SUBDIR1 = ; echo ' ' SUBDIR $$subdir; \
${MAKE} -s -C $$subdir
endif
# ./configure puts HMMER .man pages in ${top_builddir}/documentation/man
MANPAGES = \
alimask.man \
hmmalign.man \
hmmbuild.man \
hmmc2.man \
hmmconvert.man \
hmmemit.man \
hmmfetch.man \
hmmlogo.man \
hmmpgmd.man \
hmmpgmd_shard.man \
hmmpress.man \
hmmscan.man \
hmmsearch.man \
hmmsim.man \
hmmstat.man \
jackhmmer.man \
makehmmerdb.man \
nhmmer.man \
nhmmscan.man \
phmmer.man
MANPAGES_DAEMON = \
hmmc2.man \
hmmpgmd.man \
hmmpgmd_shard.man
# ./configure puts Easel .man pages in ${top_builddir}/easel/miniapps
EASEL_MANPAGES = \
esl-afetch.man \
esl-alimanip.man \
esl-alimap.man \
esl-alimask.man \
esl-alimerge.man \
esl-alipid.man \
esl-alirev.man \
esl-alistat.man \
esl-compalign.man \
esl-compstruct.man \
esl-construct.man \
esl-histplot.man \
esl-mask.man \
esl-mixdchlet.man \
esl-reformat.man \
esl-selectn.man \
esl-seqrange.man \
esl-seqstat.man \
esl-sfetch.man \
esl-shuffle.man \
esl-ssdraw.man \
esl-translate.man \
esl-weight.man
TEXFILES =\
ack.tex \
copyright.tex \
daemon.tex \
formats.tex \
glossary.tex \
install.tex \
introduction.tex \
macros.tex \
main.tex \
pipeline.tex \
tabular.tex \
titlepage.tex \
titlepage_daemon.tex \
tutorial.tex
.PHONY: pdf manpages clean distclean TAGS
pdf: Userguide.pdf Daemon_userguide.pdf
# We add ${srcdir} to TEXINPUTS, etc so we can build userguide in a build tree, with input files in source tree.
Userguide.pdf: manpages ${TEXFILES}
@for prog in pdflatex bibtex; do \
command -v $$prog >/dev/null 2>&1 || { echo >&2 "$$prog is required to build Userguide, but it's not installed. Aborting."; exit 1; } \
done
@echo " LATEX Userguide.pdf (see latex.log for output)"
@TEXINPUTS=${TEXINPUTS}:${srcdir} pdflatex main > latex.log 2>&1
@BIBINPUTS=${BIBINPUTS}:${srcdir} BSTINPUTS=${BSTINPUTS}:${srcdir} bibtex main >> latex.log 2>&1
@TEXINPUTS=${TEXINPUTS}:${srcdir} pdflatex main >> latex.log 2>&1
@TEXINPUTS=${TEXINPUTS}:${srcdir} pdflatex main >> latex.log 2>&1
@mv main.pdf Userguide.pdf
Daemon_userguide.pdf: manpages ${TEXFILES}
@for prog in pdflatex bibtex; do \
command -v $$prog >/dev/null 2>&1 || { echo >&2 "$$prog is required to build Userguide, but it's not installed. Aborting."; exit 1; } \
done
@echo " LATEX Daemon_userguide.pdf (see latex.log for output)"
@TEXINPUTS=${TEXINPUTS}:${srcdir} pdflatex daemon > latex.log 2>&1
@BIBINPUTS=${BIBINPUTS}:${srcdir} BSTINPUTS=${BSTINPUTS}:${srcdir} bibtex main >> latex.log 2>&1
@TEXINPUTS=${TEXINPUTS}:${srcdir} pdflatex daemon >> latex.log 2>&1
@TEXINPUTS=${TEXINPUTS}:${srcdir} pdflatex daemon >> latex.log 2>&1
@mv daemon.pdf Daemon_userguide.pdf
# manpages: convert man pages to LaTeX chapter in User Guide.
# uses PolyglotMan 3.2 "rman", and rmanprocess.py script in easel's devkit
manpages:
@command -v ${RMAN} >/dev/null 2>&1 || { echo >&2 "${RMAN} is required to build Userguide, but it's not installed. Aborting."; exit 1; }
@echo '%% Manual pages chapter automatically generated. Do not edit.' > manpages.tex
@echo '%% Manual pages chapter automatically generated. Do not edit.' > manpages_daemon.tex
@echo '%% Easel miniapps manpage chapter automatically generated. Do not edit.' > easel_manpages.tex
@for file in ${MANPAGES}; do\
${RMAN} -f latex2e ../man/$$file 2>/dev/null | ${RMANPROCESS} >> manpages.tex ;\
done
@for file in ${EASEL_MANPAGES}; do\
${RMAN} -f latex2e ../../easel/miniapps/$$file 2>/dev/null | ${RMANPROCESS} >> easel_manpages.tex ;\
done
@for file in ${MANPAGES_DAEMON}; do\
${RMAN} -f latex2e ../man/$$file 2>/dev/null | ${RMANPROCESS} >> manpages_daemon.tex ;\
done
clean:
${QUIET_SUBDIR0}inclusions ${QUIET_SUBDIR1} clean
-rm -f latex.log
-rm -f main.aux main.bbl main.blg main.log main.toc main.brf main.out x.log *~
-rm -f daemon.aux daemon.log daemon.out daemon.toc
ifndef V
@echo ' ' CLEAN userguide
endif
distclean: clean
${QUIET_SUBDIR0}inclusions ${QUIET_SUBDIR1} distclean
if test "x${srcdir}" != "x."; then \
for texfile in ${TEXFILES}; do \
rm -f $$texfile ;\
done ;\
fi
-rm -f titlepage.tex copyright.tex manpages.tex easel_manpages.tex
-rm -f manpages_daemon.tex titlepage_daemon.tex
-rm -f Userguide.pdf
-rm -f Daemon_userguide.pdf
-rm -f Makefile
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