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From: Michael R. Crusoe <crusoe@debian.org>
Subject: fix a typo
Forwarded: https://github.com/EddyRivasLab/hmmer/pull/217
--- hmmer.orig/easel/esl_ratematrix.c
+++ hmmer/easel/esl_ratematrix.c
@@ -398,7 +398,7 @@
*
* Args: Q - rate matrix to normalize
* pi - stationary residue frequencies
- * unit - expected subsitution rate per dt
+ * unit - expected substitution rate per dt
* (1.0 = substitutions/site; 0.01 = PAMs)
*
* Returns: <eslOK> on success, and matrix Q is rescaled.
--- hmmer.orig/easel/esl_ratematrix.tex
+++ hmmer/easel/esl_ratematrix.tex
@@ -1,3 +1,3 @@
The \eslmod{ratematrix} module implements continuous-time Markov
-evolutionary models of residue subsitution.
+evolutionary models of residue substitution.
--- hmmer.orig/easel/miniapps/esl-alimask.c
+++ hmmer/easel/miniapps/esl-alimask.c
@@ -169,7 +169,7 @@
puts("\n Only one usage listed above can be used per execution with the exception of");
puts(" -p and -g, which can be used in combination with each other.\n");
puts(" With -t, <coords> is a string that specifies positive integer start and end");
- puts(" coordinates seperated by any nonnumeric, nonspace character(s).");
+ puts(" coordinates separated by any nonnumeric, nonspace character(s).");
puts(" For example, \"23..100\" or \"23/100\" or \"23-100\" all specify that columns");
puts(" 23 to 100 be kept and all other columns be removed. Additionally, to retrieve");
puts(" all columns from a position to the end, omit the end coord; \"23:\" will work.");
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