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################################################################
# Makefile for HMMER testsuite
# CVS $Id: Makefile.in,v 1.18 2003/06/13 20:05:31 eddy Exp $
##########
# HMMER - Biological sequence analysis with profile HMMs
# Copyright (C) 1992-2003 Washington University School of Medicine
# All Rights Reserved
#
# This source code is distributed under the terms of the
# GNU General Public License. See the files COPYING and LICENSE
# for details.
###########
CC = @CC@
CFLAGS = @CFLAGS@
CPPFLAGS = @CPPFLAGS@
LDFLAGS = @LDFLAGS@
DEFS = @DEFS@
LIBS = @LIBS@ -lm
MYLIBS = -lhmmer `pkg-config --libs libsquid`
# Configuration for optional pthreads multiprocessor support
#
PTHREAD_LIBS = @PTHREAD_LIBS@
PTHREAD_CFLAGS = @PTHREAD_CFLAGS@
SHELL = /bin/sh
SHIVA = alignalign_test\
evd_test\
masks_test\
parsingviterbi_test\
tophits_test\
trace_test\
viterbi_exercise\
weeviterbi_test
#######
## Targets defining how to make Shiva executables.
#######
.c.o:
$(CC) $(CFLAGS) $(PTHREAD_CFLAGS) ${CPPFLAGS} $(DEFS) `pkg-config --cflags libsquid` -I../src -c $<
all: $(SHIVA)
$(SHIVA): @EXEC_DEPENDENCY@
$(CC) $(CFLAGS) $(PTHREAD_CFLAGS) ${LDFLAGS} $(DEFS) -o $@ -L../src $@.o $(MYLIBS) $(PTHREAD_LIBS) $(LIBS)
#######
## `make check` actually runs the tests.
#######
check:
@echo
@echo Running test suite exercises.
@echo Warning: some tests may take several minutes to complete.
@echo
./sqc 2 exercises.sqc . ../src
#######
## Miscellaneous
#######
clean:
-rm -f *.o *~ Makefile.bak core $(SHIVA) TAGS gmon.out
distclean:
make clean
-rm -f Makefile
binclean:
-rm -f *.o *~ Makefile.bak core TAGS gmon.out
TAGS:
etags -t *.c *.h Makefile.in
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