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htseq 2.0.9%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 103,476 kB
  • sloc: python: 6,280; sh: 211; cpp: 147; makefile: 80

Folder: example_data

d .. (parent)
d d rwxr-xr-x 126 10x_pbmc1k
- - rw-r--r-- 1,290,180 GCF_000001405.39_GRCh38.p13_genomic_subsample.gff.gz
- - rw-r--r-- 36,656,513 Homo_sapiens.GRCh37.56_chrom1.gtf
- - rw-r--r-- 12,849,600 SRR001432_head.bam
- - rw-r--r-- 11,926,432 SRR001432_head_sorted.bam
- - rw-r--r-- 2,873,888 SRR001432_head_sorted.bam.bai
- - rw-r--r-- 373,439 Saccharomyces_cerevisiae.SGD1.01.56.gtf.gz
- - rw-r--r-- 391,391 Saccharomyces_cerevisiae.SGD1.01.56_multiple_types.gtf.gz
- - rw-r--r-- 966,147 bamfile_no_qualities.bam
- - rw-r--r-- 282,781 bamfile_no_qualities.gtf
- - rw-r--r-- 125,044 bamfile_no_qualities.h5ad
- - rw-r--r-- 123,119 bamfile_no_qualities.loom
- - rw-r--r-- 35,465 bamfile_no_qualities.mtx
- - rw-r--r-- 3,658,025 bamfile_no_qualities.sam
- - rw-r--r-- 21,711 bamfile_no_qualities.tsv
- - rw-r--r-- 60 contig_overlap_no_warning_stderr.txt
- - rw-r--r-- 795 example_bedgraph.bedgraph
- - rw-r--r-- 695 example_bigwig.bw
- - rw-r--r-- 170 fastaEx.fa
- - rw-r--r-- 752,751 fastaExLong.fa
- - rw-r--r-- 316 fastqEx.fastq
- - rw-r--r-- 151 fastqExgzip.fastq.gz
- - rw-r--r-- 72 feature_list.txt
- - rw-r--r-- 12,987 htseq-count-multimap-test_byName.bam
- - rw-r--r-- 12,973 htseq-count-multimap-test_byPos.bam
- - rw-r--r-- 30,793 inconsistent_mate.bam
- - rw-r--r-- 341 no_contig_overlap_warning_stderr.txt
- - rw-r--r-- 3,724 short_test_ccs.bam
- - rw-r--r-- 3,782,099 yeast_RNASeq_excerpt.sam
- - rw-r--r-- 73,203 yeast_RNASeq_excerpt_default_type.tsv
- - rw-r--r-- 73,237 yeast_RNASeq_excerpt_multiple_types.tsv
- - rw-r--r-- 131 yeast_RNASeq_excerpt_non_default_type.tsv
- - rw-r--r-- 3,360,790 yeast_RNASeq_excerpt_sequence.txt
- - rw-r--r-- 3,781,889 yeast_RNASeq_excerpt_some_empty_seqs.sam
- - rw-r--r-- 73,203 yeast_RNASeq_excerpt_some_empty_seqs.tsv
- - rw-r--r-- 3,948,051 yeast_RNASeq_excerpt_withNH.sam
- - rw-r--r-- 73,203 yeast_RNASeq_excerpt_withNH_counts.tsv
- - rw-r--r-- 108 yeast_RNASeq_excerpt_withNH_counts_YPR036W-A.tsv
- - rw-r--r-- 129,754 yeast_RNASeq_excerpt_withNH_counts_additional_attributes.tsv
- - rw-r--r-- 154,486 yeast_RNASeq_excerpt_withNH_counts_additional_attributes_chromosome_info.tsv
- - rw-r--r-- 152,511 yeast_RNASeq_excerpt_withNH_counts_exon_level_and_additional_attributes.tsv
- - rw-r--r-- 73,203 yeast_RNASeq_excerpt_withNH_counts_ignore_secondary.tsv
- - rw-r--r-- 73,204 yeast_RNASeq_excerpt_withNH_counts_nonunique.tsv
- - rw-r--r-- 80,801 yeast_RNASeq_excerpt_withNH_counts_nonunique_fraction.tsv
- - rw-r--r-- 130,189 yeast_RNASeq_excerpt_withNH_counts_twocolumns.tsv
- - rw-r--r-- 408,508 yeast_RNASeq_excerpt_withbarcodes.h5ad
- - rw-r--r-- 347,698 yeast_RNASeq_excerpt_withbarcodes.loom
- - rw-r--r-- 4,632,065 yeast_RNASeq_excerpt_withbarcodes.sam
- - rw-r--r-- 101,632 yeast_RNASeq_excerpt_withbarcodes.tsv
- - rw-r--r-- 126,365 yeast_RNASeq_excerpt_withbarcodes_chromosome_info.tsv
- - rw-r--r-- 101,368 yeast_RNASeq_excerpt_withbarcodes_correctUMI_1.tsv