1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245
|
htsjdk (2.23.0+dfsg-2) unstable; urgency=medium
* source-only upload
-- Olivier Sallou <osallou@debian.org> Tue, 22 Sep 2020 13:14:11 +0000
htsjdk (2.23.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/changelog (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
-- Andreas Tille <tille@debian.org> Thu, 10 Sep 2020 17:20:43 +0200
htsjdk (2.22.0+dfsg-1) unstable; urgency=medium
* New upstream release
-- Olivier Sallou <osallou@debian.org> Fri, 29 May 2020 11:08:17 +0000
htsjdk (2.18.2+dfsg-2) unstable; urgency=medium
[ Matthias Klose ]
* Disabled the java/htsjdk/samtools/util/HttpUtilsTest test,
requires network access.
Closes: #923539
-- Andreas Tille <tille@debian.org> Fri, 01 Mar 2019 23:04:57 +0100
htsjdk (2.18.2+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
* Remove trailing whitespace in debian/changelog
[ Olivier Sallou ]
* d/p/110-debian-lib-version.patch: use scala-library 2.11,
v2.12 not yet in Debian
* fix some reflection tests issues with testng
-- Andreas Tille <tille@debian.org> Thu, 24 Jan 2019 17:31:54 +0100
htsjdk (2.16.1+dfsg-3) unstable; urgency=medium
* Fix FTBS on debian test servers due to ip/name resolution
Remove related test. Closes: #913839
-- Olivier Sallou <osallou@debian.org> Fri, 16 Nov 2018 11:06:41 +0000
htsjdk (2.16.1+dfsg-2) unstable; urgency=medium
* Fix FTBS with OpenJDK 11 (Closes: #913566)
-- Olivier Sallou <osallou@debian.org> Mon, 12 Nov 2018 15:38:32 +0000
htsjdk (2.16.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Standards-Version: 4.2.1
* Skip test requiring http connection
* d/rules: Respect DEB_BUILD_OPTIONS in override_dh_auto_test
[ Olivier Sallou ]
* Skip test requiring ftp connection
-- Andreas Tille <tille@debian.org> Wed, 19 Sep 2018 08:11:13 +0200
htsjdk (2.14.3+dfsg-3) unstable; urgency=medium
* Reintroduce unit tests after jcommander fix
-- Olivier Sallou <osallou@debian.org> Mon, 06 Aug 2018 07:03:33 +0000
htsjdk (2.14.3+dfsg-2) unstable; urgency=medium
* Upload to unstable
* Bumped versioned Build-Depends on default-jdk
-- Andreas Tille <tille@debian.org> Thu, 24 May 2018 07:53:54 +0200
htsjdk (2.14.3+dfsg-1) experimental; urgency=medium
[ Andreas Tille ]
* New upstream version
Closes: #894289
* cme fix dpkg-control
* Standards-Version: 4.1.4
* Point Vcs-fields to salsa.d.o
* Update d/copyright
* d/rules: fix get-poms target
* Use 2to3 to convert Python script to Python3
[ Olivier Sallou ]
* d/patches/30-disable-scalatest.patch
Disable scala testing as scalatest is not available in Debian yet
* d/rules
* Fix JDK9 with --add-modules java.xml.bind in javadoc generation
* Fix javadoc generation
[TODO - O. Sallou in progress]
* Reintroduce unit tests now that gradle 3.4 is available in sid
- [done] new patch added for latest upstream, referencing junit classes
- [done] added testng() call in build.gradle with a patch and set test
call in d/rules back
- testng fails now with jcommander classnotfound exception, this is a
testng bug (#895886: testng: jcommander classes not found), wait to
be fixed to enable tests in d/rules
-- Andreas Tille <tille@debian.org> Tue, 17 Apr 2018 15:14:40 +0200
htsjdk (2.8.1+dfsg-2) unstable; urgency=medium
* d/patches/50-fix-build.patch, d/rules: fix testng declaration and disable
unit testing due to gradle bug that will be fixed by gradle 3.4
=> lower severity of #877590
-- Olivier Sallou <osallou@debian.org> Wed, 01 Nov 2017 09:25:25 +0000
htsjdk (2.8.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
Closes: #847736
* debhelper 10
* d/watch: version=4
[ Vincent Danjean ]
* Add junit4 to Build-Depends
-- Andreas Tille <tille@debian.org> Sun, 18 Dec 2016 12:40:37 +0100
htsjdk (2.7.0+dfsg-2) unstable; urgency=medium
* Fix mess in this changelog (the previous upload is missing the
2.6.1+dfsg-1 entry)
-- Vincent Danjean <vdanjean@debian.org> Sun, 27 Nov 2016 21:14:49 +0100
htsjdk (2.7.0+dfsg-1) unstable; urgency=medium
* New upstream version
-- Vincent Danjean <vdanjean@debian.org> Wed, 16 Nov 2016 21:16:10 +0100
htsjdk (2.6.1+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Sat, 10 Sep 2016 08:10:12 +0200
htsjdk (2.5.0+dfsg.2-2) unstable; urgency=medium
[ Vincent Danjean ]
* Tweak build-dependencies
[ Andreas Tille ]
* Remove some more tests needing http or ftp connections
Closes: #830298
-- Andreas Tille <tille@debian.org> Sun, 10 Jul 2016 19:11:39 +0200
htsjdk (2.5.0+dfsg.2-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* Take over change from debian/jessie-backports branch to successfully obtain
JAVA_HOME
* Bump Standards-Version to 3.9.8
* Simplified watch file
[ Vincent Danjean ]
* Skip tests checking the use of the local zip implementation
* Adaptation to the new gradle build system
* Rework debian/copyright (new source layout)
* Add a maven2 pom file for htsjdk
-- Vincent Danjean <vdanjean@debian.org> Thu, 07 Jul 2016 00:12:44 +0200
htsjdk (2.1.1+dfsg.1-1) unstable; urgency=medium
[ Andreas Tille ]
* Make sure repackaged tarball is compressed with xz
[ Vincent Danjean ]
* New upstream version
* Bump Standard-Version to 3.9.7
* Switch back to default-jdk now that it is >= 1.8
-- Vincent Danjean <vdanjean@debian.org> Mon, 14 Mar 2016 22:13:50 +0100
htsjdk (2.0.1+dfsg.1-1) unstable; urgency=medium
* New upstream version
* remove network tests (Closes: #808593)
-- Andreas Tille <tille@debian.org> Mon, 15 Feb 2016 08:28:50 +0100
htsjdk (1.138+dfsg.1-4) unstable; urgency=medium
* rename (again) the source package, as htsjdk (1.138+dfsg.1-2) passed
the NEW queue. Both name (htsjdk and libhtsjdk-java) are acceptable,
so continuing with the one accepted by the FTP team.
-- Vincent Danjean <vdanjean@debian.org> Sat, 19 Dec 2015 21:30:58 +0100
libhtsjdk-java (1.138+dfsg.1-3) unstable; urgency=medium
* Dump minor debian version part. Even if htsjdk source packages have been
rejected from tyhe NEW queue as requested by ftpmaster, the binary packages
have been registered and a conflict occured:
"libhtsjdk-java_1.138+dfsg.1-1_all.deb: Does not match binary in database."
* Really Closes: #798201
-- Vincent Danjean <vdanjean@debian.org> Mon, 07 Sep 2015 12:23:11 +0200
libhtsjdk-java (1.138+dfsg.1-1) unstable; urgency=medium
* as Andreas Tille suggestions:
+ removed Shaun Jackman from Uploaders (can be added back if required)
+ rename source package from htsjdk to libhtsjdk-java (Closes: #798201)
+ fix a typo in README.Debian
-- Vincent Danjean <vdanjean@debian.org> Mon, 07 Sep 2015 10:10:37 +0200
htsjdk (1.138+dfsg.1-2) unstable; urgency=medium
* Fix version in MANIFEST
-- Vincent Danjean <vdanjean@debian.org> Mon, 07 Sep 2015 01:31:14 +0200
htsjdk (1.138+dfsg.1-1) unstable; urgency=medium
* Upstream split from picard-tools
* Initial release. Closes: #798201.
-- Vincent Danjean <vdanjean@debian.org> Sun, 06 Sep 2015 01:06:42 +0200
|