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Source: htslib
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
dh-exec,
zlib1g-dev
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/htslib.git
Vcs-Git: git://anonscm.debian.org/debian-med/htslib.git -b debian/unstable
Homepage: https://github.com/samtools/htslib
Package: libhts1
Architecture: any
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends}
Pre-Depends: ${misc:Pre-Depends}
Description: C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
Package: libhts-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends: libhts1 (= ${binary:Version}),
${misc:Depends}
Description: Development files for the HTSlib
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
Package: htslib-test
Architecture: all
Depends: ${misc:Depends},
${perl:Depends}
Description: Test data for HTSlib
This package contains test files and scripts for the HTSlib.
Package: tabix
Architecture: any
Depends: ${misc:Depends},
${shlibs:Depends}
Description: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosme), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
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