File: aspectrin2.nuc

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hyphy 2.5.69%2Bdfsg-1
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#NEXUS

BEGIN TAXA;
	DIMENSIONS NTAX = 4;
	TAXLABELS
		'humnal02' 'chikal02' 'flyal02' 'humeal02' ;
END;

BEGIN CHARACTERS;
	DIMENSIONS NCHAR = 348;
	FORMAT
		DATATYPE = DNA
		GAP=-
		MISSING=?
		INTERLEAVED
	;

MATRIX
	'humnal02'  GCCCAGAACTTGGTGCAGTACTTACGAGAATGTGAGGACGTGATGGACTG
	'chikal02'  GCACAGAAGCTGGTGCAATTCTTACGGGAATGTGAAGATGTCATGGACTG
	'flyal02'   GCTCTCGTCCTGGTGCAGTTCCTGCGCCAGTGCGAGGAGGTGATGTTCTG
	'humeal02'  GCCCTGAAGTTCCAGCAGTATGTACAGGAGTGTGCTGACATCTTAGAGTG


	'humnal02'  GATCAATGACAAGGAAGCAATTGTTACTTCTGAAGAGCTGGGCCAGGATC
	'chikal02'  GATCAATGACAAGGAAGCAATAGTGACCTCAGAAGAGCTTGGACAGGACT
	'flyal02'   GATTAAGGACAAGGAGACCTTTGTCACCGCCGACGAGTTCGGCCAAGACC
	'humeal02'  GATTGGAGACAAGGAGGCTATAGCGACATCAGTGGAGCTAGGTGAAGACT


	'humnal02'  TGGAGCATGTAGAGGTTTTACAGAAGAAATTTGAAGAGTTTCAAACAGAT
	'chikal02'  TAGAGCATGTTGAGGTTTTGCAGAAGAAATTTGAAGAGTTCCAAACAGAT
	'flyal02'   TGGAACATGTAGAGGTTCTGCAGCGCAAGTTCGATGAGTTCCAGAAGGAC
	'humeal02'  GGGAGCGCACCGAAGTTCTGCATAAGAAATTTGAAGACTTCCAAGTGGAG


	'humnal02'  ATGGCTGCTCATGAAGAAAGAGTTAATGAAGTGAACCAGTTTGCTGCCAA
	'chikal02'  CTGGCAGCTCATGAGGAGAGAGTGAATGAAGTGAACCAGTTCGCTGGGAA
	'flyal02'   ATGGCCTCCCAGGAGTATCGCGTGACTGAGGTCAACCAGTTGGCCGATAA
	'humeal02'  CTGGTAGCTAAAGAAGGGAGAGTTGTTGAAGTGAACCAATATGCCAATGA


	'humnal02'  ACTCATACAGGAGCAGCACCCTGAGGAGGAACTG------ATCAAGACTA
	'chikal02'  ACTTATCCAGGAACAGCACCCTGAGGAGGAACTT------ATAAAGTCCA
	'flyal02'   GTTGGTGCAAGATGGTCATCCCGAGCGCGATACG------ATTACCAAGC
	'humeal02'  GTGTGCCGAGGAAAACCATCCTGACCTACCCTTA------ATTCAGTCTA


	'humnal02'  AGCAGGATGAAGTCAATGCAGCCTGGCAGCGGCTGAAGGGCCTGGCTCTG
	'chikal02'  AACAGGATGAAGTAAATGCAAGCTGGCAGCGTCTTAAGGGGCTTGCCCAA
	'flyal02'   GCAAGGAGGAGCTAAACGAGGCTTGGCAGCGACTTAAGCAGTTAGCCATT
	'humeal02'  AGCAAAATGAGGTGAATGCTGCCTGGGAGCGCCTTCGTGGTTTGGCTCTC


	'humnal02'  CAGAGGCAGGGGAAGCTCTTTGGG------------------------
	'chikal02'  CAGAGGCAAGGAAAACTCTTTGGG------------------------
	'flyal02'   GTGCGCCAAGAGAAGCTATTCGGT------------------------
	'humeal02'  CAGAGACAGAAAGCTCTGTCCAAT------------------------

;
END;

BEGIN TREES;
	TREE tree = ((1,2),3,4);
END;