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Source: idba
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
dh-autoreconf
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/idba.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/idba.git
Homepage: https://github.com/loneknightpy/idba
Package: idba
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
python
Description: iterative De Bruijn Graph De Novo short read assembler for transcriptome
IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler
for transcriptome. It is purely de novo assembler based on only RNA
sequencing reads. IDBA-Tran uses local assembly to reconstructing
missing k-mers in low-expressed transcripts and then employs progressive
cutoff on contigs to separate the graph into components. Each component
corresponds to one gene in most cases and contains not many transcripts.
A heuristic algorithm based on pair-end reads is then used to find the
isoforms.
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