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#!/bin/sh
MANDIR=debian/idba-man
mkdir -p $MANDIR
VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
PROGNAME=`grep "^Package:" debian/control | sed 's/^Package: *//' | head -n1`
AUTHOR=".SH AUTHOR\n \
This manpage was written by $DEBFULLNAME for the Debian distribution and\n \
can be used for any other usage of the program.\
"
# If program name is different from package name or title should be
# different from package short description change this here
progname=${PROGNAME}
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Iterative de Bruijn Graph Assembler" \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=idba_tran
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Iterative de Bruijn Graph Assembler for next-generation transcriptome sequencing data." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=idba_hybrid
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Iterative de Bruijn Graph Assembler for hybrid sequencing data." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=idba_ud
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Iterative de Bruijn Graph Assembler for sequencing data with highly uneven depth." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
echo "$MANDIR/*.1" > debian/${PROGNAME}.manpages
################ for idba-extra package
MANDIR=debian/idba-extra-man
mkdir -p $MANDIR
progname=fq2fa
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Convert Fastq sequences to Fasta sequences." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=filter_blat
help2man --no-info --no-discard-stderr --help-option=" -h" \
--name="Validate contigs by blat." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=filter_contigs
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Simulate sequencing reads from references." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=sim_reads
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Convert Fastq sequences to Fasta sequences." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
progname=sim_reads_tran
help2man --no-info --no-discard-stderr --help-option=" " \
--name="Simulate sequencing reads from transcripts references and expression level profile." \
--version-string="$VERSION" ${progname} | grep -v -e "unknown option" -e "not enough parameters" > $MANDIR/${progname}.1
echo $AUTHOR >> $MANDIR/${progname}.1
echo "$MANDIR/*.1" > debian/idba-extra.manpages
cat <<EOT
Please enhance the help2man output.
The following web page might be helpful in doing so:
http://liw.fi/manpages/
EOT
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