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idba 1.1.3-8
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 4,412 kB
  • sloc: cpp: 36,571; sh: 1,450; makefile: 203; python: 99; perl: 8
file content (43 lines) | stat: -rw-r--r-- 1,433 bytes parent folder | download
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Bug-Database: https://github.com/loneknightpy/idba/issues
Reference:
- Author: >
    Yu Peng and Henry C. M. Leung and S. M. Yiu and Francis Y. L. Chin
  Title: >
    IDBA-UD: a de novo assembler for single-cell and metagenomic
    sequencing data with highly uneven depth
  Journal: Bioinformatics
  Year: 2012
  Volume: 28
  Number: 11
  Pages: 1420-1428
  DOI: 10.1093/bioinformatics/bts174
  PMID: 22495754
  URL: http://bioinformatics.oxfordjournals.org/content/28/11/1420.full
  eprint: "http://bioinformatics.oxfordjournals.org/content/28/11/1420.full.pdf+html"
- Author: >
    Yu Peng and Henry C. M. Leung and Siu-Ming Yiu and Ming-Ju Lv and
    Xin-Guang Zhu and Francis Y. L. Chin
  Title: >
    IDBA-tran: a more robust de novo de Bruijn graph assembler for
    transcriptomes with uneven expression levels
  Journal: Bioinformatics
  Year: 2013
  Month: Jul
  Day: 1
  Volume: 29
  Number: 13
  Pages: i326-i334
  DOI: 10.1093/bioinformatics/btt219
  PMID: 23813001
  URL: "https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btt219"
  eprint: "https://academic.oup.com/bioinformatics/article-pdf/29/13/i326/18534891/btt219.pdf"
Registry:
- Name: bio.tools
  Entry: IDBA
- Name: SciCrunch
  Entry: SCR_011912
- Name: conda:bioconda
  Entry: idba
Repository: https://github.com/loneknightpy/idba.git
Bug-Submit: loneknightpy@gmail.com
Repository-Browse: https://github.com/loneknightpy/idba