File: Makefile.in

package info (click to toggle)
idba 1.1.3-8
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 4,412 kB
  • sloc: cpp: 36,571; sh: 1,450; makefile: 203; python: 99; perl: 8
file content (969 lines) | stat: -rw-r--r-- 71,322 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
# Makefile.in generated by automake 1.14.1 from Makefile.am.
# @configure_input@

# Copyright (C) 1994-2013 Free Software Foundation, Inc.

# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.

@SET_MAKE@

VPATH = @srcdir@
am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
am__make_running_with_option = \
  case $${target_option-} in \
      ?) ;; \
      *) echo "am__make_running_with_option: internal error: invalid" \
              "target option '$${target_option-}' specified" >&2; \
         exit 1;; \
  esac; \
  has_opt=no; \
  sane_makeflags=$$MAKEFLAGS; \
  if $(am__is_gnu_make); then \
    sane_makeflags=$$MFLAGS; \
  else \
    case $$MAKEFLAGS in \
      *\\[\ \	]*) \
        bs=\\; \
        sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
          | sed "s/$$bs$$bs[$$bs $$bs	]*//g"`;; \
    esac; \
  fi; \
  skip_next=no; \
  strip_trailopt () \
  { \
    flg=`printf '%s\n' "$$flg" | sed "s/$$1.*$$//"`; \
  }; \
  for flg in $$sane_makeflags; do \
    test $$skip_next = yes && { skip_next=no; continue; }; \
    case $$flg in \
      *=*|--*) continue;; \
        -*I) strip_trailopt 'I'; skip_next=yes;; \
      -*I?*) strip_trailopt 'I';; \
        -*O) strip_trailopt 'O'; skip_next=yes;; \
      -*O?*) strip_trailopt 'O';; \
        -*l) strip_trailopt 'l'; skip_next=yes;; \
      -*l?*) strip_trailopt 'l';; \
      -[dEDm]) skip_next=yes;; \
      -[JT]) skip_next=yes;; \
    esac; \
    case $$flg in \
      *$$target_option*) has_opt=yes; break;; \
    esac; \
  done; \
  test $$has_opt = yes
am__make_dryrun = (target_option=n; $(am__make_running_with_option))
am__make_keepgoing = (target_option=k; $(am__make_running_with_option))
pkgdatadir = $(datadir)/@PACKAGE@
pkgincludedir = $(includedir)/@PACKAGE@
pkglibdir = $(libdir)/@PACKAGE@
pkglibexecdir = $(libexecdir)/@PACKAGE@
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
subdir = lib
DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am \
	$(top_srcdir)/depcomp
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
	$(ACLOCAL_M4)
mkinstalldirs = $(install_sh) -d
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
LIBRARIES = $(noinst_LIBRARIES)
AR = ar
ARFLAGS = cru
AM_V_AR = $(am__v_AR_@AM_V@)
am__v_AR_ = $(am__v_AR_@AM_DEFAULT_V@)
am__v_AR_0 = @echo "  AR      " $@;
am__v_AR_1 = 
libassembly_a_AR = $(AR) $(ARFLAGS)
libassembly_a_LIBADD =
am_libassembly_a_OBJECTS = math.$(OBJEXT) hash_aligner.$(OBJEXT) \
	options_description.$(OBJEXT) log.$(OBJEXT) utils.$(OBJEXT) \
	blat_record.$(OBJEXT) short_sequence.$(OBJEXT) \
	sequence_reader.$(OBJEXT) sequence_writer.$(OBJEXT) \
	sequence_io.$(OBJEXT) sequence.$(OBJEXT) \
	compact_sequence.$(OBJEXT) contig_graph_branch_group.$(OBJEXT) \
	hash_graph.$(OBJEXT) scaffold_graph.$(OBJEXT) \
	contig_graph.$(OBJEXT) hash_graph_branch_group.$(OBJEXT) \
	contig_info.$(OBJEXT) local_assembler.$(OBJEXT) \
	assembly_utility.$(OBJEXT)
libassembly_a_OBJECTS = $(am_libassembly_a_OBJECTS)
libgtest_a_AR = $(AR) $(ARFLAGS)
libgtest_a_LIBADD =
am_libgtest_a_OBJECTS = gtest_main.$(OBJEXT) gtest-all.$(OBJEXT)
libgtest_a_OBJECTS = $(am_libgtest_a_OBJECTS)
AM_V_P = $(am__v_P_@AM_V@)
am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
am__v_P_0 = false
am__v_P_1 = :
AM_V_GEN = $(am__v_GEN_@AM_V@)
am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@)
am__v_GEN_0 = @echo "  GEN     " $@;
am__v_GEN_1 = 
AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 = 
DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
AM_V_lt = $(am__v_lt_@AM_V@)
am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
am__v_lt_0 = --silent
am__v_lt_1 = 
CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
AM_V_CXX = $(am__v_CXX_@AM_V@)
am__v_CXX_ = $(am__v_CXX_@AM_DEFAULT_V@)
am__v_CXX_0 = @echo "  CXX     " $@;
am__v_CXX_1 = 
CXXLD = $(CXX)
CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
	-o $@
AM_V_CXXLD = $(am__v_CXXLD_@AM_V@)
am__v_CXXLD_ = $(am__v_CXXLD_@AM_DEFAULT_V@)
am__v_CXXLD_0 = @echo "  CXXLD   " $@;
am__v_CXXLD_1 = 
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
AM_V_CC = $(am__v_CC_@AM_V@)
am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@)
am__v_CC_0 = @echo "  CC      " $@;
am__v_CC_1 = 
CCLD = $(CC)
LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
AM_V_CCLD = $(am__v_CCLD_@AM_V@)
am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@)
am__v_CCLD_0 = @echo "  CCLD    " $@;
am__v_CCLD_1 = 
SOURCES = $(libassembly_a_SOURCES) $(libgtest_a_SOURCES)
DIST_SOURCES = $(libassembly_a_SOURCES) $(libgtest_a_SOURCES)
am__can_run_installinfo = \
  case $$AM_UPDATE_INFO_DIR in \
    n|no|NO) false;; \
    *) (install-info --version) >/dev/null 2>&1;; \
  esac
am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
# Read a list of newline-separated strings from the standard input,
# and print each of them once, without duplicates.  Input order is
# *not* preserved.
am__uniquify_input = $(AWK) '\
  BEGIN { nonempty = 0; } \
  { items[$$0] = 1; nonempty = 1; } \
  END { if (nonempty) { for (i in items) print i; }; } \
'
# Make sure the list of sources is unique.  This is necessary because,
# e.g., the same source file might be shared among _SOURCES variables
# for different programs/libraries.
am__define_uniq_tagged_files = \
  list='$(am__tagged_files)'; \
  unique=`for i in $$list; do \
    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
  done | $(am__uniquify_input)`
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = @ACLOCAL@
AMTAR = @AMTAR@
AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
AUTOCONF = @AUTOCONF@
AUTOHEADER = @AUTOHEADER@
AUTOMAKE = @AUTOMAKE@
AWK = @AWK@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CFLAGS = @CFLAGS@
CPP = @CPP@
CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXDEPMODE = @CXXDEPMODE@
CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEFS = @DEFS@
DEPDIR = @DEPDIR@
ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
EXEEXT = @EXEEXT@
GREP = @GREP@
INSTALL = @INSTALL@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
LIBS = @LIBS@
LTLIBOBJS = @LTLIBOBJS@
MAKEINFO = @MAKEINFO@
MKDIR_P = @MKDIR_P@
OBJEXT = @OBJEXT@
PACKAGE = @PACKAGE@
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
PACKAGE_NAME = @PACKAGE_NAME@
PACKAGE_STRING = @PACKAGE_STRING@
PACKAGE_TARNAME = @PACKAGE_TARNAME@
PACKAGE_URL = @PACKAGE_URL@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
RANLIB = @RANLIB@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
VERSION = @VERSION@
abs_builddir = @abs_builddir@
abs_srcdir = @abs_srcdir@
abs_top_builddir = @abs_top_builddir@
abs_top_srcdir = @abs_top_srcdir@
ac_ct_CC = @ac_ct_CC@
ac_ct_CXX = @ac_ct_CXX@
am__include = @am__include@
am__leading_dot = @am__leading_dot@
am__quote = @am__quote@
am__tar = @am__tar@
am__untar = @am__untar@
bindir = @bindir@
build_alias = @build_alias@
builddir = @builddir@
datadir = @datadir@
datarootdir = @datarootdir@
docdir = @docdir@
dvidir = @dvidir@
exec_prefix = @exec_prefix@
host_alias = @host_alias@
htmldir = @htmldir@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
localedir = @localedir@
localstatedir = @localstatedir@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
pdfdir = @pdfdir@
prefix = @prefix@
program_transform_name = @program_transform_name@
psdir = @psdir@
sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
srcdir = @srcdir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
AM_LDFLAGS = -fopenmp -pthread
AM_CXXFLAGS = -Wall -O3 -fopenmp -pthread
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/gtest_src 
libassembly_a_SOURCES = \
	$(top_srcdir)/src/basic/atomic_integer.h \
	$(top_srcdir)/src/basic/functional.h \
	$(top_srcdir)/src/basic/kmer.h \
	$(top_srcdir)/src/basic/math.cpp \
	$(top_srcdir)/src/basic/math.h \
	$(top_srcdir)/src/basic/hash.h \
	$(top_srcdir)/src/basic/histgram.h \
	$(top_srcdir)/src/basic/pool.h \
	$(top_srcdir)/src/basic/bit_operation.h \
	$(top_srcdir)/src/container/hash_table.h \
	$(top_srcdir)/src/container/hash_set.h \
	$(top_srcdir)/src/container/managed_list.h \
	$(top_srcdir)/src/container/hash_map.h \
	$(top_srcdir)/src/misc/hash_aligner.cpp \
	$(top_srcdir)/src/misc/blat_record.h \
	$(top_srcdir)/src/misc/options_description.cpp \
	$(top_srcdir)/src/misc/log.cpp \
	$(top_srcdir)/src/misc/log.h \
	$(top_srcdir)/src/misc/utils.cpp \
	$(top_srcdir)/src/misc/hash_aligner.h \
	$(top_srcdir)/src/misc/utils.h \
	$(top_srcdir)/src/misc/blat_record.cpp \
	$(top_srcdir)/src/misc/options_description.h \
	$(top_srcdir)/src/sequence/short_sequence.cpp \
	$(top_srcdir)/src/sequence/sequence.h \
	$(top_srcdir)/src/sequence/compact_sequence.h \
	$(top_srcdir)/src/sequence/sequence_reader.cpp \
	$(top_srcdir)/src/sequence/sequence_writer.cpp \
	$(top_srcdir)/src/sequence/sequence_io.cpp \
	$(top_srcdir)/src/sequence/short_sequence.h \
	$(top_srcdir)/src/sequence/read_library.h \
	$(top_srcdir)/src/sequence/sequence.cpp \
	$(top_srcdir)/src/sequence/sequence_writer.h \
	$(top_srcdir)/src/sequence/sequence_io.h \
	$(top_srcdir)/src/sequence/sequence_reader.h \
	$(top_srcdir)/src/sequence/compact_sequence.cpp \
	$(top_srcdir)/src/graph/contig_graph_branch_group.cpp \
	$(top_srcdir)/src/graph/hash_graph_vertex.h \
	$(top_srcdir)/src/graph/hash_graph.h \
	$(top_srcdir)/src/graph/contig_graph.h \
	$(top_srcdir)/src/graph/hash_graph.cpp \
	$(top_srcdir)/src/graph/scaffold_graph.h \
	$(top_srcdir)/src/graph/scaffold_graph.cpp \
	$(top_srcdir)/src/graph/vertex_status.h \
	$(top_srcdir)/src/graph/hash_graph_branch_group.h \
	$(top_srcdir)/src/graph/contig_builder.h \
	$(top_srcdir)/src/graph/scaffold_graph_path.h \
	$(top_srcdir)/src/graph/contig_info.h \
	$(top_srcdir)/src/graph/contig_graph_branch_group.h \
	$(top_srcdir)/src/graph/scaffold_graph_vertex.h \
	$(top_srcdir)/src/graph/contig_graph_vertex.h \
	$(top_srcdir)/src/graph/contig_graph.cpp \
	$(top_srcdir)/src/graph/hash_graph_branch_group.cpp \
	$(top_srcdir)/src/graph/contig_graph_path.h \
	$(top_srcdir)/src/graph/contig_info.cpp \
	$(top_srcdir)/src/graph/hash_graph_path.h \
	$(top_srcdir)/src/graph/bit_edges.h \
	$(top_srcdir)/src/assembly/local_assembler.h \
	$(top_srcdir)/src/assembly/assembly_utility.h \
	$(top_srcdir)/src/assembly/local_assembler.cpp \
	$(top_srcdir)/src/assembly/assembly_utility.cpp 

libgtest_a_SOURCES = \
	$(top_srcdir)/gtest_src/gtest/gtest.h \
	$(top_srcdir)/gtest_src/gtest/gtest_main.cc \
	$(top_srcdir)/gtest_src/gtest/gtest-all.cc 

noinst_LIBRARIES = \
	libassembly.a \
	libgtest.a 

all: all-am

.SUFFIXES:
.SUFFIXES: .cc .cpp .o .obj
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
	done; \
	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu lib/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu lib/Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
	@case '$?' in \
	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
	  *) \
	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
	esac;

$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

$(top_srcdir)/configure:  $(am__configure_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):

clean-noinstLIBRARIES:
	-test -z "$(noinst_LIBRARIES)" || rm -f $(noinst_LIBRARIES)

libassembly.a: $(libassembly_a_OBJECTS) $(libassembly_a_DEPENDENCIES) $(EXTRA_libassembly_a_DEPENDENCIES) 
	$(AM_V_at)-rm -f libassembly.a
	$(AM_V_AR)$(libassembly_a_AR) libassembly.a $(libassembly_a_OBJECTS) $(libassembly_a_LIBADD)
	$(AM_V_at)$(RANLIB) libassembly.a

libgtest.a: $(libgtest_a_OBJECTS) $(libgtest_a_DEPENDENCIES) $(EXTRA_libgtest_a_DEPENDENCIES) 
	$(AM_V_at)-rm -f libgtest.a
	$(AM_V_AR)$(libgtest_a_AR) libgtest.a $(libgtest_a_OBJECTS) $(libgtest_a_LIBADD)
	$(AM_V_at)$(RANLIB) libgtest.a

mostlyclean-compile:
	-rm -f *.$(OBJEXT)

distclean-compile:
	-rm -f *.tab.c

@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/assembly_utility.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/blat_record.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/compact_sequence.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/contig_graph.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/contig_graph_branch_group.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/contig_info.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gtest-all.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gtest_main.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_aligner.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_graph.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_graph_branch_group.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/local_assembler.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/log.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/math.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/options_description.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scaffold_graph.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence_io.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence_reader.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence_writer.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/short_sequence.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/utils.Po@am__quote@

.cc.o:
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $<

.cc.obj:
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`

math.o: $(top_srcdir)/src/basic/math.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT math.o -MD -MP -MF $(DEPDIR)/math.Tpo -c -o math.o `test -f '$(top_srcdir)/src/basic/math.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/basic/math.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/math.Tpo $(DEPDIR)/math.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/basic/math.cpp' object='math.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o math.o `test -f '$(top_srcdir)/src/basic/math.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/basic/math.cpp

math.obj: $(top_srcdir)/src/basic/math.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT math.obj -MD -MP -MF $(DEPDIR)/math.Tpo -c -o math.obj `if test -f '$(top_srcdir)/src/basic/math.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/basic/math.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/basic/math.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/math.Tpo $(DEPDIR)/math.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/basic/math.cpp' object='math.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o math.obj `if test -f '$(top_srcdir)/src/basic/math.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/basic/math.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/basic/math.cpp'; fi`

hash_aligner.o: $(top_srcdir)/src/misc/hash_aligner.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_aligner.o -MD -MP -MF $(DEPDIR)/hash_aligner.Tpo -c -o hash_aligner.o `test -f '$(top_srcdir)/src/misc/hash_aligner.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/hash_aligner.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/hash_aligner.Tpo $(DEPDIR)/hash_aligner.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/hash_aligner.cpp' object='hash_aligner.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_aligner.o `test -f '$(top_srcdir)/src/misc/hash_aligner.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/hash_aligner.cpp

hash_aligner.obj: $(top_srcdir)/src/misc/hash_aligner.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_aligner.obj -MD -MP -MF $(DEPDIR)/hash_aligner.Tpo -c -o hash_aligner.obj `if test -f '$(top_srcdir)/src/misc/hash_aligner.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/hash_aligner.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/hash_aligner.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/hash_aligner.Tpo $(DEPDIR)/hash_aligner.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/hash_aligner.cpp' object='hash_aligner.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_aligner.obj `if test -f '$(top_srcdir)/src/misc/hash_aligner.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/hash_aligner.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/hash_aligner.cpp'; fi`

options_description.o: $(top_srcdir)/src/misc/options_description.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT options_description.o -MD -MP -MF $(DEPDIR)/options_description.Tpo -c -o options_description.o `test -f '$(top_srcdir)/src/misc/options_description.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/options_description.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/options_description.Tpo $(DEPDIR)/options_description.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/options_description.cpp' object='options_description.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o options_description.o `test -f '$(top_srcdir)/src/misc/options_description.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/options_description.cpp

options_description.obj: $(top_srcdir)/src/misc/options_description.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT options_description.obj -MD -MP -MF $(DEPDIR)/options_description.Tpo -c -o options_description.obj `if test -f '$(top_srcdir)/src/misc/options_description.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/options_description.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/options_description.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/options_description.Tpo $(DEPDIR)/options_description.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/options_description.cpp' object='options_description.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o options_description.obj `if test -f '$(top_srcdir)/src/misc/options_description.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/options_description.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/options_description.cpp'; fi`

log.o: $(top_srcdir)/src/misc/log.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT log.o -MD -MP -MF $(DEPDIR)/log.Tpo -c -o log.o `test -f '$(top_srcdir)/src/misc/log.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/log.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/log.Tpo $(DEPDIR)/log.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/log.cpp' object='log.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o log.o `test -f '$(top_srcdir)/src/misc/log.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/log.cpp

log.obj: $(top_srcdir)/src/misc/log.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT log.obj -MD -MP -MF $(DEPDIR)/log.Tpo -c -o log.obj `if test -f '$(top_srcdir)/src/misc/log.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/log.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/log.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/log.Tpo $(DEPDIR)/log.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/log.cpp' object='log.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o log.obj `if test -f '$(top_srcdir)/src/misc/log.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/log.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/log.cpp'; fi`

utils.o: $(top_srcdir)/src/misc/utils.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT utils.o -MD -MP -MF $(DEPDIR)/utils.Tpo -c -o utils.o `test -f '$(top_srcdir)/src/misc/utils.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/utils.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/utils.Tpo $(DEPDIR)/utils.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/utils.cpp' object='utils.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o utils.o `test -f '$(top_srcdir)/src/misc/utils.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/utils.cpp

utils.obj: $(top_srcdir)/src/misc/utils.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT utils.obj -MD -MP -MF $(DEPDIR)/utils.Tpo -c -o utils.obj `if test -f '$(top_srcdir)/src/misc/utils.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/utils.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/utils.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/utils.Tpo $(DEPDIR)/utils.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/utils.cpp' object='utils.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o utils.obj `if test -f '$(top_srcdir)/src/misc/utils.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/utils.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/utils.cpp'; fi`

blat_record.o: $(top_srcdir)/src/misc/blat_record.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT blat_record.o -MD -MP -MF $(DEPDIR)/blat_record.Tpo -c -o blat_record.o `test -f '$(top_srcdir)/src/misc/blat_record.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/blat_record.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/blat_record.Tpo $(DEPDIR)/blat_record.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/blat_record.cpp' object='blat_record.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o blat_record.o `test -f '$(top_srcdir)/src/misc/blat_record.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/blat_record.cpp

blat_record.obj: $(top_srcdir)/src/misc/blat_record.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT blat_record.obj -MD -MP -MF $(DEPDIR)/blat_record.Tpo -c -o blat_record.obj `if test -f '$(top_srcdir)/src/misc/blat_record.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/blat_record.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/blat_record.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/blat_record.Tpo $(DEPDIR)/blat_record.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/misc/blat_record.cpp' object='blat_record.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o blat_record.obj `if test -f '$(top_srcdir)/src/misc/blat_record.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/blat_record.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/blat_record.cpp'; fi`

short_sequence.o: $(top_srcdir)/src/sequence/short_sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT short_sequence.o -MD -MP -MF $(DEPDIR)/short_sequence.Tpo -c -o short_sequence.o `test -f '$(top_srcdir)/src/sequence/short_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/short_sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/short_sequence.Tpo $(DEPDIR)/short_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/short_sequence.cpp' object='short_sequence.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o short_sequence.o `test -f '$(top_srcdir)/src/sequence/short_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/short_sequence.cpp

short_sequence.obj: $(top_srcdir)/src/sequence/short_sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT short_sequence.obj -MD -MP -MF $(DEPDIR)/short_sequence.Tpo -c -o short_sequence.obj `if test -f '$(top_srcdir)/src/sequence/short_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/short_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/short_sequence.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/short_sequence.Tpo $(DEPDIR)/short_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/short_sequence.cpp' object='short_sequence.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o short_sequence.obj `if test -f '$(top_srcdir)/src/sequence/short_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/short_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/short_sequence.cpp'; fi`

sequence_reader.o: $(top_srcdir)/src/sequence/sequence_reader.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_reader.o -MD -MP -MF $(DEPDIR)/sequence_reader.Tpo -c -o sequence_reader.o `test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_reader.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence_reader.Tpo $(DEPDIR)/sequence_reader.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_reader.cpp' object='sequence_reader.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_reader.o `test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_reader.cpp

sequence_reader.obj: $(top_srcdir)/src/sequence/sequence_reader.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_reader.obj -MD -MP -MF $(DEPDIR)/sequence_reader.Tpo -c -o sequence_reader.obj `if test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_reader.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_reader.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence_reader.Tpo $(DEPDIR)/sequence_reader.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_reader.cpp' object='sequence_reader.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_reader.obj `if test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_reader.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_reader.cpp'; fi`

sequence_writer.o: $(top_srcdir)/src/sequence/sequence_writer.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_writer.o -MD -MP -MF $(DEPDIR)/sequence_writer.Tpo -c -o sequence_writer.o `test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_writer.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence_writer.Tpo $(DEPDIR)/sequence_writer.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_writer.cpp' object='sequence_writer.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_writer.o `test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_writer.cpp

sequence_writer.obj: $(top_srcdir)/src/sequence/sequence_writer.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_writer.obj -MD -MP -MF $(DEPDIR)/sequence_writer.Tpo -c -o sequence_writer.obj `if test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_writer.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_writer.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence_writer.Tpo $(DEPDIR)/sequence_writer.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_writer.cpp' object='sequence_writer.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_writer.obj `if test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_writer.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_writer.cpp'; fi`

sequence_io.o: $(top_srcdir)/src/sequence/sequence_io.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_io.o -MD -MP -MF $(DEPDIR)/sequence_io.Tpo -c -o sequence_io.o `test -f '$(top_srcdir)/src/sequence/sequence_io.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_io.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence_io.Tpo $(DEPDIR)/sequence_io.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_io.cpp' object='sequence_io.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_io.o `test -f '$(top_srcdir)/src/sequence/sequence_io.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_io.cpp

sequence_io.obj: $(top_srcdir)/src/sequence/sequence_io.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_io.obj -MD -MP -MF $(DEPDIR)/sequence_io.Tpo -c -o sequence_io.obj `if test -f '$(top_srcdir)/src/sequence/sequence_io.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_io.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_io.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence_io.Tpo $(DEPDIR)/sequence_io.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_io.cpp' object='sequence_io.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_io.obj `if test -f '$(top_srcdir)/src/sequence/sequence_io.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_io.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_io.cpp'; fi`

sequence.o: $(top_srcdir)/src/sequence/sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence.o -MD -MP -MF $(DEPDIR)/sequence.Tpo -c -o sequence.o `test -f '$(top_srcdir)/src/sequence/sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence.Tpo $(DEPDIR)/sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence.cpp' object='sequence.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence.o `test -f '$(top_srcdir)/src/sequence/sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence.cpp

sequence.obj: $(top_srcdir)/src/sequence/sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence.obj -MD -MP -MF $(DEPDIR)/sequence.Tpo -c -o sequence.obj `if test -f '$(top_srcdir)/src/sequence/sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/sequence.Tpo $(DEPDIR)/sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence.cpp' object='sequence.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence.obj `if test -f '$(top_srcdir)/src/sequence/sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence.cpp'; fi`

compact_sequence.o: $(top_srcdir)/src/sequence/compact_sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT compact_sequence.o -MD -MP -MF $(DEPDIR)/compact_sequence.Tpo -c -o compact_sequence.o `test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/compact_sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/compact_sequence.Tpo $(DEPDIR)/compact_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/compact_sequence.cpp' object='compact_sequence.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o compact_sequence.o `test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/compact_sequence.cpp

compact_sequence.obj: $(top_srcdir)/src/sequence/compact_sequence.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT compact_sequence.obj -MD -MP -MF $(DEPDIR)/compact_sequence.Tpo -c -o compact_sequence.obj `if test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/compact_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/compact_sequence.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/compact_sequence.Tpo $(DEPDIR)/compact_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/sequence/compact_sequence.cpp' object='compact_sequence.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o compact_sequence.obj `if test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/compact_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/compact_sequence.cpp'; fi`

contig_graph_branch_group.o: $(top_srcdir)/src/graph/contig_graph_branch_group.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph_branch_group.o -MD -MP -MF $(DEPDIR)/contig_graph_branch_group.Tpo -c -o contig_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph_branch_group.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph_branch_group.Tpo $(DEPDIR)/contig_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' object='contig_graph_branch_group.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph_branch_group.cpp

contig_graph_branch_group.obj: $(top_srcdir)/src/graph/contig_graph_branch_group.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph_branch_group.obj -MD -MP -MF $(DEPDIR)/contig_graph_branch_group.Tpo -c -o contig_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph_branch_group.Tpo $(DEPDIR)/contig_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' object='contig_graph_branch_group.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; fi`

hash_graph.o: $(top_srcdir)/src/graph/hash_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph.o -MD -MP -MF $(DEPDIR)/hash_graph.Tpo -c -o hash_graph.o `test -f '$(top_srcdir)/src/graph/hash_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph.Tpo $(DEPDIR)/hash_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph.cpp' object='hash_graph.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph.o `test -f '$(top_srcdir)/src/graph/hash_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph.cpp

hash_graph.obj: $(top_srcdir)/src/graph/hash_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph.obj -MD -MP -MF $(DEPDIR)/hash_graph.Tpo -c -o hash_graph.obj `if test -f '$(top_srcdir)/src/graph/hash_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph.Tpo $(DEPDIR)/hash_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph.cpp' object='hash_graph.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph.obj `if test -f '$(top_srcdir)/src/graph/hash_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph.cpp'; fi`

scaffold_graph.o: $(top_srcdir)/src/graph/scaffold_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT scaffold_graph.o -MD -MP -MF $(DEPDIR)/scaffold_graph.Tpo -c -o scaffold_graph.o `test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/scaffold_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/scaffold_graph.Tpo $(DEPDIR)/scaffold_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/scaffold_graph.cpp' object='scaffold_graph.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o scaffold_graph.o `test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/scaffold_graph.cpp

scaffold_graph.obj: $(top_srcdir)/src/graph/scaffold_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT scaffold_graph.obj -MD -MP -MF $(DEPDIR)/scaffold_graph.Tpo -c -o scaffold_graph.obj `if test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/scaffold_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/scaffold_graph.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/scaffold_graph.Tpo $(DEPDIR)/scaffold_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/scaffold_graph.cpp' object='scaffold_graph.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o scaffold_graph.obj `if test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/scaffold_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/scaffold_graph.cpp'; fi`

contig_graph.o: $(top_srcdir)/src/graph/contig_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph.o -MD -MP -MF $(DEPDIR)/contig_graph.Tpo -c -o contig_graph.o `test -f '$(top_srcdir)/src/graph/contig_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph.Tpo $(DEPDIR)/contig_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph.cpp' object='contig_graph.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph.o `test -f '$(top_srcdir)/src/graph/contig_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph.cpp

contig_graph.obj: $(top_srcdir)/src/graph/contig_graph.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph.obj -MD -MP -MF $(DEPDIR)/contig_graph.Tpo -c -o contig_graph.obj `if test -f '$(top_srcdir)/src/graph/contig_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph.Tpo $(DEPDIR)/contig_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph.cpp' object='contig_graph.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph.obj `if test -f '$(top_srcdir)/src/graph/contig_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph.cpp'; fi`

hash_graph_branch_group.o: $(top_srcdir)/src/graph/hash_graph_branch_group.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph_branch_group.o -MD -MP -MF $(DEPDIR)/hash_graph_branch_group.Tpo -c -o hash_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph_branch_group.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph_branch_group.Tpo $(DEPDIR)/hash_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' object='hash_graph_branch_group.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph_branch_group.cpp

hash_graph_branch_group.obj: $(top_srcdir)/src/graph/hash_graph_branch_group.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph_branch_group.obj -MD -MP -MF $(DEPDIR)/hash_graph_branch_group.Tpo -c -o hash_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph_branch_group.Tpo $(DEPDIR)/hash_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' object='hash_graph_branch_group.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; fi`

contig_info.o: $(top_srcdir)/src/graph/contig_info.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_info.o -MD -MP -MF $(DEPDIR)/contig_info.Tpo -c -o contig_info.o `test -f '$(top_srcdir)/src/graph/contig_info.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_info.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/contig_info.Tpo $(DEPDIR)/contig_info.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_info.cpp' object='contig_info.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_info.o `test -f '$(top_srcdir)/src/graph/contig_info.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_info.cpp

contig_info.obj: $(top_srcdir)/src/graph/contig_info.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_info.obj -MD -MP -MF $(DEPDIR)/contig_info.Tpo -c -o contig_info.obj `if test -f '$(top_srcdir)/src/graph/contig_info.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_info.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_info.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/contig_info.Tpo $(DEPDIR)/contig_info.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_info.cpp' object='contig_info.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_info.obj `if test -f '$(top_srcdir)/src/graph/contig_info.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_info.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_info.cpp'; fi`

local_assembler.o: $(top_srcdir)/src/assembly/local_assembler.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT local_assembler.o -MD -MP -MF $(DEPDIR)/local_assembler.Tpo -c -o local_assembler.o `test -f '$(top_srcdir)/src/assembly/local_assembler.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/local_assembler.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/local_assembler.Tpo $(DEPDIR)/local_assembler.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/assembly/local_assembler.cpp' object='local_assembler.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o local_assembler.o `test -f '$(top_srcdir)/src/assembly/local_assembler.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/local_assembler.cpp

local_assembler.obj: $(top_srcdir)/src/assembly/local_assembler.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT local_assembler.obj -MD -MP -MF $(DEPDIR)/local_assembler.Tpo -c -o local_assembler.obj `if test -f '$(top_srcdir)/src/assembly/local_assembler.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/local_assembler.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/local_assembler.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/local_assembler.Tpo $(DEPDIR)/local_assembler.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/assembly/local_assembler.cpp' object='local_assembler.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o local_assembler.obj `if test -f '$(top_srcdir)/src/assembly/local_assembler.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/local_assembler.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/local_assembler.cpp'; fi`

assembly_utility.o: $(top_srcdir)/src/assembly/assembly_utility.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT assembly_utility.o -MD -MP -MF $(DEPDIR)/assembly_utility.Tpo -c -o assembly_utility.o `test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/assembly_utility.cpp
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/assembly_utility.Tpo $(DEPDIR)/assembly_utility.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/assembly/assembly_utility.cpp' object='assembly_utility.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o assembly_utility.o `test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/assembly_utility.cpp

assembly_utility.obj: $(top_srcdir)/src/assembly/assembly_utility.cpp
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT assembly_utility.obj -MD -MP -MF $(DEPDIR)/assembly_utility.Tpo -c -o assembly_utility.obj `if test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/assembly_utility.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/assembly_utility.cpp'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/assembly_utility.Tpo $(DEPDIR)/assembly_utility.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/src/assembly/assembly_utility.cpp' object='assembly_utility.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o assembly_utility.obj `if test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/assembly_utility.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/assembly_utility.cpp'; fi`

gtest_main.o: $(top_srcdir)/gtest_src/gtest/gtest_main.cc
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest_main.o -MD -MP -MF $(DEPDIR)/gtest_main.Tpo -c -o gtest_main.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest_main.cc
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/gtest_main.Tpo $(DEPDIR)/gtest_main.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest_main.cc' object='gtest_main.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest_main.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest_main.cc

gtest_main.obj: $(top_srcdir)/gtest_src/gtest/gtest_main.cc
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest_main.obj -MD -MP -MF $(DEPDIR)/gtest_main.Tpo -c -o gtest_main.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/gtest_main.Tpo $(DEPDIR)/gtest_main.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest_main.cc' object='gtest_main.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest_main.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; fi`

gtest-all.o: $(top_srcdir)/gtest_src/gtest/gtest-all.cc
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest-all.o -MD -MP -MF $(DEPDIR)/gtest-all.Tpo -c -o gtest-all.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest-all.cc
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/gtest-all.Tpo $(DEPDIR)/gtest-all.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest-all.cc' object='gtest-all.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest-all.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest-all.cc

gtest-all.obj: $(top_srcdir)/gtest_src/gtest/gtest-all.cc
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest-all.obj -MD -MP -MF $(DEPDIR)/gtest-all.Tpo -c -o gtest-all.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; fi`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/gtest-all.Tpo $(DEPDIR)/gtest-all.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest-all.cc' object='gtest-all.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest-all.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; fi`

.cpp.o:
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $<

.cpp.obj:
@am__fastdepCXX_TRUE@	$(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
@am__fastdepCXX_TRUE@	$(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	$(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@	$(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`

ID: $(am__tagged_files)
	$(am__define_uniq_tagged_files); mkid -fID $$unique
tags: tags-am
TAGS: tags

tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
	set x; \
	here=`pwd`; \
	$(am__define_uniq_tagged_files); \
	shift; \
	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
	  test -n "$$unique" || unique=$$empty_fix; \
	  if test $$# -gt 0; then \
	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	      "$$@" $$unique; \
	  else \
	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	      $$unique; \
	  fi; \
	fi
ctags: ctags-am

CTAGS: ctags
ctags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
	$(am__define_uniq_tagged_files); \
	test -z "$(CTAGS_ARGS)$$unique" \
	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
	     $$unique

GTAGS:
	here=`$(am__cd) $(top_builddir) && pwd` \
	  && $(am__cd) $(top_srcdir) \
	  && gtags -i $(GTAGS_ARGS) "$$here"
cscopelist: cscopelist-am

cscopelist-am: $(am__tagged_files)
	list='$(am__tagged_files)'; \
	case "$(srcdir)" in \
	  [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \
	  *) sdir=$(subdir)/$(srcdir) ;; \
	esac; \
	for i in $$list; do \
	  if test -f "$$i"; then \
	    echo "$(subdir)/$$i"; \
	  else \
	    echo "$$sdir/$$i"; \
	  fi; \
	done >> $(top_builddir)/cscope.files

distclean-tags:
	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags

distdir: $(DISTFILES)
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(LIBRARIES)
installdirs:
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic clean-noinstLIBRARIES mostlyclean-am

distclean: distclean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
	distclean-tags

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am:

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am:

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-compile mostlyclean-generic

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am:

.MAKE: install-am install-strip

.PHONY: CTAGS GTAGS TAGS all all-am check check-am clean clean-generic \
	clean-noinstLIBRARIES cscopelist-am ctags ctags-am distclean \
	distclean-compile distclean-generic distclean-tags distdir dvi \
	dvi-am html html-am info info-am install install-am \
	install-data install-data-am install-dvi install-dvi-am \
	install-exec install-exec-am install-html install-html-am \
	install-info install-info-am install-man install-pdf \
	install-pdf-am install-ps install-ps-am install-strip \
	installcheck installcheck-am installdirs maintainer-clean \
	maintainer-clean-generic mostlyclean mostlyclean-compile \
	mostlyclean-generic pdf pdf-am ps ps-am tags tags-am uninstall \
	uninstall-am


# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: