1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969
|
# Makefile.in generated by automake 1.14.1 from Makefile.am.
# @configure_input@
# Copyright (C) 1994-2013 Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.
@SET_MAKE@
VPATH = @srcdir@
am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
am__make_running_with_option = \
case $${target_option-} in \
?) ;; \
*) echo "am__make_running_with_option: internal error: invalid" \
"target option '$${target_option-}' specified" >&2; \
exit 1;; \
esac; \
has_opt=no; \
sane_makeflags=$$MAKEFLAGS; \
if $(am__is_gnu_make); then \
sane_makeflags=$$MFLAGS; \
else \
case $$MAKEFLAGS in \
*\\[\ \ ]*) \
bs=\\; \
sane_makeflags=`printf '%s\n' "$$MAKEFLAGS" \
| sed "s/$$bs$$bs[$$bs $$bs ]*//g"`;; \
esac; \
fi; \
skip_next=no; \
strip_trailopt () \
{ \
flg=`printf '%s\n' "$$flg" | sed "s/$$1.*$$//"`; \
}; \
for flg in $$sane_makeflags; do \
test $$skip_next = yes && { skip_next=no; continue; }; \
case $$flg in \
*=*|--*) continue;; \
-*I) strip_trailopt 'I'; skip_next=yes;; \
-*I?*) strip_trailopt 'I';; \
-*O) strip_trailopt 'O'; skip_next=yes;; \
-*O?*) strip_trailopt 'O';; \
-*l) strip_trailopt 'l'; skip_next=yes;; \
-*l?*) strip_trailopt 'l';; \
-[dEDm]) skip_next=yes;; \
-[JT]) skip_next=yes;; \
esac; \
case $$flg in \
*$$target_option*) has_opt=yes; break;; \
esac; \
done; \
test $$has_opt = yes
am__make_dryrun = (target_option=n; $(am__make_running_with_option))
am__make_keepgoing = (target_option=k; $(am__make_running_with_option))
pkgdatadir = $(datadir)/@PACKAGE@
pkgincludedir = $(includedir)/@PACKAGE@
pkglibdir = $(libdir)/@PACKAGE@
pkglibexecdir = $(libexecdir)/@PACKAGE@
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
subdir = lib
DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am \
$(top_srcdir)/depcomp
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
mkinstalldirs = $(install_sh) -d
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
LIBRARIES = $(noinst_LIBRARIES)
AR = ar
ARFLAGS = cru
AM_V_AR = $(am__v_AR_@AM_V@)
am__v_AR_ = $(am__v_AR_@AM_DEFAULT_V@)
am__v_AR_0 = @echo " AR " $@;
am__v_AR_1 =
libassembly_a_AR = $(AR) $(ARFLAGS)
libassembly_a_LIBADD =
am_libassembly_a_OBJECTS = math.$(OBJEXT) hash_aligner.$(OBJEXT) \
options_description.$(OBJEXT) log.$(OBJEXT) utils.$(OBJEXT) \
blat_record.$(OBJEXT) short_sequence.$(OBJEXT) \
sequence_reader.$(OBJEXT) sequence_writer.$(OBJEXT) \
sequence_io.$(OBJEXT) sequence.$(OBJEXT) \
compact_sequence.$(OBJEXT) contig_graph_branch_group.$(OBJEXT) \
hash_graph.$(OBJEXT) scaffold_graph.$(OBJEXT) \
contig_graph.$(OBJEXT) hash_graph_branch_group.$(OBJEXT) \
contig_info.$(OBJEXT) local_assembler.$(OBJEXT) \
assembly_utility.$(OBJEXT)
libassembly_a_OBJECTS = $(am_libassembly_a_OBJECTS)
libgtest_a_AR = $(AR) $(ARFLAGS)
libgtest_a_LIBADD =
am_libgtest_a_OBJECTS = gtest_main.$(OBJEXT) gtest-all.$(OBJEXT)
libgtest_a_OBJECTS = $(am_libgtest_a_OBJECTS)
AM_V_P = $(am__v_P_@AM_V@)
am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
am__v_P_0 = false
am__v_P_1 = :
AM_V_GEN = $(am__v_GEN_@AM_V@)
am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@)
am__v_GEN_0 = @echo " GEN " $@;
am__v_GEN_1 =
AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
AM_V_lt = $(am__v_lt_@AM_V@)
am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
am__v_lt_0 = --silent
am__v_lt_1 =
CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
AM_V_CXX = $(am__v_CXX_@AM_V@)
am__v_CXX_ = $(am__v_CXX_@AM_DEFAULT_V@)
am__v_CXX_0 = @echo " CXX " $@;
am__v_CXX_1 =
CXXLD = $(CXX)
CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
-o $@
AM_V_CXXLD = $(am__v_CXXLD_@AM_V@)
am__v_CXXLD_ = $(am__v_CXXLD_@AM_DEFAULT_V@)
am__v_CXXLD_0 = @echo " CXXLD " $@;
am__v_CXXLD_1 =
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
AM_V_CC = $(am__v_CC_@AM_V@)
am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@)
am__v_CC_0 = @echo " CC " $@;
am__v_CC_1 =
CCLD = $(CC)
LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
AM_V_CCLD = $(am__v_CCLD_@AM_V@)
am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@)
am__v_CCLD_0 = @echo " CCLD " $@;
am__v_CCLD_1 =
SOURCES = $(libassembly_a_SOURCES) $(libgtest_a_SOURCES)
DIST_SOURCES = $(libassembly_a_SOURCES) $(libgtest_a_SOURCES)
am__can_run_installinfo = \
case $$AM_UPDATE_INFO_DIR in \
n|no|NO) false;; \
*) (install-info --version) >/dev/null 2>&1;; \
esac
am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP)
# Read a list of newline-separated strings from the standard input,
# and print each of them once, without duplicates. Input order is
# *not* preserved.
am__uniquify_input = $(AWK) '\
BEGIN { nonempty = 0; } \
{ items[$$0] = 1; nonempty = 1; } \
END { if (nonempty) { for (i in items) print i; }; } \
'
# Make sure the list of sources is unique. This is necessary because,
# e.g., the same source file might be shared among _SOURCES variables
# for different programs/libraries.
am__define_uniq_tagged_files = \
list='$(am__tagged_files)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | $(am__uniquify_input)`
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = @ACLOCAL@
AMTAR = @AMTAR@
AM_DEFAULT_VERBOSITY = @AM_DEFAULT_VERBOSITY@
AUTOCONF = @AUTOCONF@
AUTOHEADER = @AUTOHEADER@
AUTOMAKE = @AUTOMAKE@
AWK = @AWK@
CC = @CC@
CCDEPMODE = @CCDEPMODE@
CFLAGS = @CFLAGS@
CPP = @CPP@
CPPFLAGS = @CPPFLAGS@
CXX = @CXX@
CXXDEPMODE = @CXXDEPMODE@
CXXFLAGS = @CXXFLAGS@
CYGPATH_W = @CYGPATH_W@
DEFS = @DEFS@
DEPDIR = @DEPDIR@
ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
EXEEXT = @EXEEXT@
GREP = @GREP@
INSTALL = @INSTALL@
INSTALL_DATA = @INSTALL_DATA@
INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
LDFLAGS = @LDFLAGS@
LIBOBJS = @LIBOBJS@
LIBS = @LIBS@
LTLIBOBJS = @LTLIBOBJS@
MAKEINFO = @MAKEINFO@
MKDIR_P = @MKDIR_P@
OBJEXT = @OBJEXT@
PACKAGE = @PACKAGE@
PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
PACKAGE_NAME = @PACKAGE_NAME@
PACKAGE_STRING = @PACKAGE_STRING@
PACKAGE_TARNAME = @PACKAGE_TARNAME@
PACKAGE_URL = @PACKAGE_URL@
PACKAGE_VERSION = @PACKAGE_VERSION@
PATH_SEPARATOR = @PATH_SEPARATOR@
RANLIB = @RANLIB@
SET_MAKE = @SET_MAKE@
SHELL = @SHELL@
STRIP = @STRIP@
VERSION = @VERSION@
abs_builddir = @abs_builddir@
abs_srcdir = @abs_srcdir@
abs_top_builddir = @abs_top_builddir@
abs_top_srcdir = @abs_top_srcdir@
ac_ct_CC = @ac_ct_CC@
ac_ct_CXX = @ac_ct_CXX@
am__include = @am__include@
am__leading_dot = @am__leading_dot@
am__quote = @am__quote@
am__tar = @am__tar@
am__untar = @am__untar@
bindir = @bindir@
build_alias = @build_alias@
builddir = @builddir@
datadir = @datadir@
datarootdir = @datarootdir@
docdir = @docdir@
dvidir = @dvidir@
exec_prefix = @exec_prefix@
host_alias = @host_alias@
htmldir = @htmldir@
includedir = @includedir@
infodir = @infodir@
install_sh = @install_sh@
libdir = @libdir@
libexecdir = @libexecdir@
localedir = @localedir@
localstatedir = @localstatedir@
mandir = @mandir@
mkdir_p = @mkdir_p@
oldincludedir = @oldincludedir@
pdfdir = @pdfdir@
prefix = @prefix@
program_transform_name = @program_transform_name@
psdir = @psdir@
sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
srcdir = @srcdir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
AM_LDFLAGS = -fopenmp -pthread
AM_CXXFLAGS = -Wall -O3 -fopenmp -pthread
INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/gtest_src
libassembly_a_SOURCES = \
$(top_srcdir)/src/basic/atomic_integer.h \
$(top_srcdir)/src/basic/functional.h \
$(top_srcdir)/src/basic/kmer.h \
$(top_srcdir)/src/basic/math.cpp \
$(top_srcdir)/src/basic/math.h \
$(top_srcdir)/src/basic/hash.h \
$(top_srcdir)/src/basic/histgram.h \
$(top_srcdir)/src/basic/pool.h \
$(top_srcdir)/src/basic/bit_operation.h \
$(top_srcdir)/src/container/hash_table.h \
$(top_srcdir)/src/container/hash_set.h \
$(top_srcdir)/src/container/managed_list.h \
$(top_srcdir)/src/container/hash_map.h \
$(top_srcdir)/src/misc/hash_aligner.cpp \
$(top_srcdir)/src/misc/blat_record.h \
$(top_srcdir)/src/misc/options_description.cpp \
$(top_srcdir)/src/misc/log.cpp \
$(top_srcdir)/src/misc/log.h \
$(top_srcdir)/src/misc/utils.cpp \
$(top_srcdir)/src/misc/hash_aligner.h \
$(top_srcdir)/src/misc/utils.h \
$(top_srcdir)/src/misc/blat_record.cpp \
$(top_srcdir)/src/misc/options_description.h \
$(top_srcdir)/src/sequence/short_sequence.cpp \
$(top_srcdir)/src/sequence/sequence.h \
$(top_srcdir)/src/sequence/compact_sequence.h \
$(top_srcdir)/src/sequence/sequence_reader.cpp \
$(top_srcdir)/src/sequence/sequence_writer.cpp \
$(top_srcdir)/src/sequence/sequence_io.cpp \
$(top_srcdir)/src/sequence/short_sequence.h \
$(top_srcdir)/src/sequence/read_library.h \
$(top_srcdir)/src/sequence/sequence.cpp \
$(top_srcdir)/src/sequence/sequence_writer.h \
$(top_srcdir)/src/sequence/sequence_io.h \
$(top_srcdir)/src/sequence/sequence_reader.h \
$(top_srcdir)/src/sequence/compact_sequence.cpp \
$(top_srcdir)/src/graph/contig_graph_branch_group.cpp \
$(top_srcdir)/src/graph/hash_graph_vertex.h \
$(top_srcdir)/src/graph/hash_graph.h \
$(top_srcdir)/src/graph/contig_graph.h \
$(top_srcdir)/src/graph/hash_graph.cpp \
$(top_srcdir)/src/graph/scaffold_graph.h \
$(top_srcdir)/src/graph/scaffold_graph.cpp \
$(top_srcdir)/src/graph/vertex_status.h \
$(top_srcdir)/src/graph/hash_graph_branch_group.h \
$(top_srcdir)/src/graph/contig_builder.h \
$(top_srcdir)/src/graph/scaffold_graph_path.h \
$(top_srcdir)/src/graph/contig_info.h \
$(top_srcdir)/src/graph/contig_graph_branch_group.h \
$(top_srcdir)/src/graph/scaffold_graph_vertex.h \
$(top_srcdir)/src/graph/contig_graph_vertex.h \
$(top_srcdir)/src/graph/contig_graph.cpp \
$(top_srcdir)/src/graph/hash_graph_branch_group.cpp \
$(top_srcdir)/src/graph/contig_graph_path.h \
$(top_srcdir)/src/graph/contig_info.cpp \
$(top_srcdir)/src/graph/hash_graph_path.h \
$(top_srcdir)/src/graph/bit_edges.h \
$(top_srcdir)/src/assembly/local_assembler.h \
$(top_srcdir)/src/assembly/assembly_utility.h \
$(top_srcdir)/src/assembly/local_assembler.cpp \
$(top_srcdir)/src/assembly/assembly_utility.cpp
libgtest_a_SOURCES = \
$(top_srcdir)/gtest_src/gtest/gtest.h \
$(top_srcdir)/gtest_src/gtest/gtest_main.cc \
$(top_srcdir)/gtest_src/gtest/gtest-all.cc
noinst_LIBRARIES = \
libassembly.a \
libgtest.a
all: all-am
.SUFFIXES:
.SUFFIXES: .cc .cpp .o .obj
$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
@for dep in $?; do \
case '$(am__configure_deps)' in \
*$$dep*) \
( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
&& { if test -f $@; then exit 0; else break; fi; }; \
exit 1;; \
esac; \
done; \
echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu lib/Makefile'; \
$(am__cd) $(top_srcdir) && \
$(AUTOMAKE) --gnu lib/Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
@case '$?' in \
*config.status*) \
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
*) \
echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
esac;
$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(top_srcdir)/configure: $(am__configure_deps)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4): $(am__aclocal_m4_deps)
cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
clean-noinstLIBRARIES:
-test -z "$(noinst_LIBRARIES)" || rm -f $(noinst_LIBRARIES)
libassembly.a: $(libassembly_a_OBJECTS) $(libassembly_a_DEPENDENCIES) $(EXTRA_libassembly_a_DEPENDENCIES)
$(AM_V_at)-rm -f libassembly.a
$(AM_V_AR)$(libassembly_a_AR) libassembly.a $(libassembly_a_OBJECTS) $(libassembly_a_LIBADD)
$(AM_V_at)$(RANLIB) libassembly.a
libgtest.a: $(libgtest_a_OBJECTS) $(libgtest_a_DEPENDENCIES) $(EXTRA_libgtest_a_DEPENDENCIES)
$(AM_V_at)-rm -f libgtest.a
$(AM_V_AR)$(libgtest_a_AR) libgtest.a $(libgtest_a_OBJECTS) $(libgtest_a_LIBADD)
$(AM_V_at)$(RANLIB) libgtest.a
mostlyclean-compile:
-rm -f *.$(OBJEXT)
distclean-compile:
-rm -f *.tab.c
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/assembly_utility.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/blat_record.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/compact_sequence.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/contig_graph.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/contig_graph_branch_group.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/contig_info.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gtest-all.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/gtest_main.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_aligner.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_graph.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/hash_graph_branch_group.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/local_assembler.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/log.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/math.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/options_description.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scaffold_graph.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence_io.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence_reader.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sequence_writer.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/short_sequence.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/utils.Po@am__quote@
.cc.o:
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $<
.cc.obj:
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
math.o: $(top_srcdir)/src/basic/math.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT math.o -MD -MP -MF $(DEPDIR)/math.Tpo -c -o math.o `test -f '$(top_srcdir)/src/basic/math.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/basic/math.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/math.Tpo $(DEPDIR)/math.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/basic/math.cpp' object='math.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o math.o `test -f '$(top_srcdir)/src/basic/math.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/basic/math.cpp
math.obj: $(top_srcdir)/src/basic/math.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT math.obj -MD -MP -MF $(DEPDIR)/math.Tpo -c -o math.obj `if test -f '$(top_srcdir)/src/basic/math.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/basic/math.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/basic/math.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/math.Tpo $(DEPDIR)/math.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/basic/math.cpp' object='math.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o math.obj `if test -f '$(top_srcdir)/src/basic/math.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/basic/math.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/basic/math.cpp'; fi`
hash_aligner.o: $(top_srcdir)/src/misc/hash_aligner.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_aligner.o -MD -MP -MF $(DEPDIR)/hash_aligner.Tpo -c -o hash_aligner.o `test -f '$(top_srcdir)/src/misc/hash_aligner.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/hash_aligner.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/hash_aligner.Tpo $(DEPDIR)/hash_aligner.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/hash_aligner.cpp' object='hash_aligner.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_aligner.o `test -f '$(top_srcdir)/src/misc/hash_aligner.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/hash_aligner.cpp
hash_aligner.obj: $(top_srcdir)/src/misc/hash_aligner.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_aligner.obj -MD -MP -MF $(DEPDIR)/hash_aligner.Tpo -c -o hash_aligner.obj `if test -f '$(top_srcdir)/src/misc/hash_aligner.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/hash_aligner.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/hash_aligner.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/hash_aligner.Tpo $(DEPDIR)/hash_aligner.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/hash_aligner.cpp' object='hash_aligner.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_aligner.obj `if test -f '$(top_srcdir)/src/misc/hash_aligner.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/hash_aligner.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/hash_aligner.cpp'; fi`
options_description.o: $(top_srcdir)/src/misc/options_description.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT options_description.o -MD -MP -MF $(DEPDIR)/options_description.Tpo -c -o options_description.o `test -f '$(top_srcdir)/src/misc/options_description.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/options_description.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/options_description.Tpo $(DEPDIR)/options_description.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/options_description.cpp' object='options_description.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o options_description.o `test -f '$(top_srcdir)/src/misc/options_description.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/options_description.cpp
options_description.obj: $(top_srcdir)/src/misc/options_description.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT options_description.obj -MD -MP -MF $(DEPDIR)/options_description.Tpo -c -o options_description.obj `if test -f '$(top_srcdir)/src/misc/options_description.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/options_description.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/options_description.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/options_description.Tpo $(DEPDIR)/options_description.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/options_description.cpp' object='options_description.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o options_description.obj `if test -f '$(top_srcdir)/src/misc/options_description.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/options_description.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/options_description.cpp'; fi`
log.o: $(top_srcdir)/src/misc/log.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT log.o -MD -MP -MF $(DEPDIR)/log.Tpo -c -o log.o `test -f '$(top_srcdir)/src/misc/log.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/log.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/log.Tpo $(DEPDIR)/log.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/log.cpp' object='log.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o log.o `test -f '$(top_srcdir)/src/misc/log.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/log.cpp
log.obj: $(top_srcdir)/src/misc/log.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT log.obj -MD -MP -MF $(DEPDIR)/log.Tpo -c -o log.obj `if test -f '$(top_srcdir)/src/misc/log.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/log.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/log.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/log.Tpo $(DEPDIR)/log.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/log.cpp' object='log.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o log.obj `if test -f '$(top_srcdir)/src/misc/log.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/log.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/log.cpp'; fi`
utils.o: $(top_srcdir)/src/misc/utils.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT utils.o -MD -MP -MF $(DEPDIR)/utils.Tpo -c -o utils.o `test -f '$(top_srcdir)/src/misc/utils.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/utils.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/utils.Tpo $(DEPDIR)/utils.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/utils.cpp' object='utils.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o utils.o `test -f '$(top_srcdir)/src/misc/utils.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/utils.cpp
utils.obj: $(top_srcdir)/src/misc/utils.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT utils.obj -MD -MP -MF $(DEPDIR)/utils.Tpo -c -o utils.obj `if test -f '$(top_srcdir)/src/misc/utils.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/utils.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/utils.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/utils.Tpo $(DEPDIR)/utils.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/utils.cpp' object='utils.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o utils.obj `if test -f '$(top_srcdir)/src/misc/utils.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/utils.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/utils.cpp'; fi`
blat_record.o: $(top_srcdir)/src/misc/blat_record.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT blat_record.o -MD -MP -MF $(DEPDIR)/blat_record.Tpo -c -o blat_record.o `test -f '$(top_srcdir)/src/misc/blat_record.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/blat_record.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/blat_record.Tpo $(DEPDIR)/blat_record.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/blat_record.cpp' object='blat_record.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o blat_record.o `test -f '$(top_srcdir)/src/misc/blat_record.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/misc/blat_record.cpp
blat_record.obj: $(top_srcdir)/src/misc/blat_record.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT blat_record.obj -MD -MP -MF $(DEPDIR)/blat_record.Tpo -c -o blat_record.obj `if test -f '$(top_srcdir)/src/misc/blat_record.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/blat_record.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/blat_record.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/blat_record.Tpo $(DEPDIR)/blat_record.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/misc/blat_record.cpp' object='blat_record.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o blat_record.obj `if test -f '$(top_srcdir)/src/misc/blat_record.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/misc/blat_record.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/misc/blat_record.cpp'; fi`
short_sequence.o: $(top_srcdir)/src/sequence/short_sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT short_sequence.o -MD -MP -MF $(DEPDIR)/short_sequence.Tpo -c -o short_sequence.o `test -f '$(top_srcdir)/src/sequence/short_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/short_sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/short_sequence.Tpo $(DEPDIR)/short_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/short_sequence.cpp' object='short_sequence.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o short_sequence.o `test -f '$(top_srcdir)/src/sequence/short_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/short_sequence.cpp
short_sequence.obj: $(top_srcdir)/src/sequence/short_sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT short_sequence.obj -MD -MP -MF $(DEPDIR)/short_sequence.Tpo -c -o short_sequence.obj `if test -f '$(top_srcdir)/src/sequence/short_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/short_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/short_sequence.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/short_sequence.Tpo $(DEPDIR)/short_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/short_sequence.cpp' object='short_sequence.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o short_sequence.obj `if test -f '$(top_srcdir)/src/sequence/short_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/short_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/short_sequence.cpp'; fi`
sequence_reader.o: $(top_srcdir)/src/sequence/sequence_reader.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_reader.o -MD -MP -MF $(DEPDIR)/sequence_reader.Tpo -c -o sequence_reader.o `test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_reader.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence_reader.Tpo $(DEPDIR)/sequence_reader.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_reader.cpp' object='sequence_reader.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_reader.o `test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_reader.cpp
sequence_reader.obj: $(top_srcdir)/src/sequence/sequence_reader.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_reader.obj -MD -MP -MF $(DEPDIR)/sequence_reader.Tpo -c -o sequence_reader.obj `if test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_reader.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_reader.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence_reader.Tpo $(DEPDIR)/sequence_reader.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_reader.cpp' object='sequence_reader.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_reader.obj `if test -f '$(top_srcdir)/src/sequence/sequence_reader.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_reader.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_reader.cpp'; fi`
sequence_writer.o: $(top_srcdir)/src/sequence/sequence_writer.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_writer.o -MD -MP -MF $(DEPDIR)/sequence_writer.Tpo -c -o sequence_writer.o `test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_writer.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence_writer.Tpo $(DEPDIR)/sequence_writer.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_writer.cpp' object='sequence_writer.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_writer.o `test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_writer.cpp
sequence_writer.obj: $(top_srcdir)/src/sequence/sequence_writer.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_writer.obj -MD -MP -MF $(DEPDIR)/sequence_writer.Tpo -c -o sequence_writer.obj `if test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_writer.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_writer.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence_writer.Tpo $(DEPDIR)/sequence_writer.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_writer.cpp' object='sequence_writer.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_writer.obj `if test -f '$(top_srcdir)/src/sequence/sequence_writer.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_writer.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_writer.cpp'; fi`
sequence_io.o: $(top_srcdir)/src/sequence/sequence_io.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_io.o -MD -MP -MF $(DEPDIR)/sequence_io.Tpo -c -o sequence_io.o `test -f '$(top_srcdir)/src/sequence/sequence_io.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_io.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence_io.Tpo $(DEPDIR)/sequence_io.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_io.cpp' object='sequence_io.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_io.o `test -f '$(top_srcdir)/src/sequence/sequence_io.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence_io.cpp
sequence_io.obj: $(top_srcdir)/src/sequence/sequence_io.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence_io.obj -MD -MP -MF $(DEPDIR)/sequence_io.Tpo -c -o sequence_io.obj `if test -f '$(top_srcdir)/src/sequence/sequence_io.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_io.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_io.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence_io.Tpo $(DEPDIR)/sequence_io.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence_io.cpp' object='sequence_io.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence_io.obj `if test -f '$(top_srcdir)/src/sequence/sequence_io.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence_io.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence_io.cpp'; fi`
sequence.o: $(top_srcdir)/src/sequence/sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence.o -MD -MP -MF $(DEPDIR)/sequence.Tpo -c -o sequence.o `test -f '$(top_srcdir)/src/sequence/sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence.Tpo $(DEPDIR)/sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence.cpp' object='sequence.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence.o `test -f '$(top_srcdir)/src/sequence/sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/sequence.cpp
sequence.obj: $(top_srcdir)/src/sequence/sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT sequence.obj -MD -MP -MF $(DEPDIR)/sequence.Tpo -c -o sequence.obj `if test -f '$(top_srcdir)/src/sequence/sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/sequence.Tpo $(DEPDIR)/sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/sequence.cpp' object='sequence.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o sequence.obj `if test -f '$(top_srcdir)/src/sequence/sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/sequence.cpp'; fi`
compact_sequence.o: $(top_srcdir)/src/sequence/compact_sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT compact_sequence.o -MD -MP -MF $(DEPDIR)/compact_sequence.Tpo -c -o compact_sequence.o `test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/compact_sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/compact_sequence.Tpo $(DEPDIR)/compact_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/compact_sequence.cpp' object='compact_sequence.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o compact_sequence.o `test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/sequence/compact_sequence.cpp
compact_sequence.obj: $(top_srcdir)/src/sequence/compact_sequence.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT compact_sequence.obj -MD -MP -MF $(DEPDIR)/compact_sequence.Tpo -c -o compact_sequence.obj `if test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/compact_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/compact_sequence.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/compact_sequence.Tpo $(DEPDIR)/compact_sequence.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/sequence/compact_sequence.cpp' object='compact_sequence.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o compact_sequence.obj `if test -f '$(top_srcdir)/src/sequence/compact_sequence.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/sequence/compact_sequence.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/sequence/compact_sequence.cpp'; fi`
contig_graph_branch_group.o: $(top_srcdir)/src/graph/contig_graph_branch_group.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph_branch_group.o -MD -MP -MF $(DEPDIR)/contig_graph_branch_group.Tpo -c -o contig_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph_branch_group.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph_branch_group.Tpo $(DEPDIR)/contig_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' object='contig_graph_branch_group.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph_branch_group.cpp
contig_graph_branch_group.obj: $(top_srcdir)/src/graph/contig_graph_branch_group.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph_branch_group.obj -MD -MP -MF $(DEPDIR)/contig_graph_branch_group.Tpo -c -o contig_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph_branch_group.Tpo $(DEPDIR)/contig_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph_branch_group.cpp' object='contig_graph_branch_group.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph_branch_group.cpp'; fi`
hash_graph.o: $(top_srcdir)/src/graph/hash_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph.o -MD -MP -MF $(DEPDIR)/hash_graph.Tpo -c -o hash_graph.o `test -f '$(top_srcdir)/src/graph/hash_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph.Tpo $(DEPDIR)/hash_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph.cpp' object='hash_graph.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph.o `test -f '$(top_srcdir)/src/graph/hash_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph.cpp
hash_graph.obj: $(top_srcdir)/src/graph/hash_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph.obj -MD -MP -MF $(DEPDIR)/hash_graph.Tpo -c -o hash_graph.obj `if test -f '$(top_srcdir)/src/graph/hash_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph.Tpo $(DEPDIR)/hash_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph.cpp' object='hash_graph.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph.obj `if test -f '$(top_srcdir)/src/graph/hash_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph.cpp'; fi`
scaffold_graph.o: $(top_srcdir)/src/graph/scaffold_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT scaffold_graph.o -MD -MP -MF $(DEPDIR)/scaffold_graph.Tpo -c -o scaffold_graph.o `test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/scaffold_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/scaffold_graph.Tpo $(DEPDIR)/scaffold_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/scaffold_graph.cpp' object='scaffold_graph.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o scaffold_graph.o `test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/scaffold_graph.cpp
scaffold_graph.obj: $(top_srcdir)/src/graph/scaffold_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT scaffold_graph.obj -MD -MP -MF $(DEPDIR)/scaffold_graph.Tpo -c -o scaffold_graph.obj `if test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/scaffold_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/scaffold_graph.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/scaffold_graph.Tpo $(DEPDIR)/scaffold_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/scaffold_graph.cpp' object='scaffold_graph.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o scaffold_graph.obj `if test -f '$(top_srcdir)/src/graph/scaffold_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/scaffold_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/scaffold_graph.cpp'; fi`
contig_graph.o: $(top_srcdir)/src/graph/contig_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph.o -MD -MP -MF $(DEPDIR)/contig_graph.Tpo -c -o contig_graph.o `test -f '$(top_srcdir)/src/graph/contig_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph.Tpo $(DEPDIR)/contig_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph.cpp' object='contig_graph.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph.o `test -f '$(top_srcdir)/src/graph/contig_graph.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_graph.cpp
contig_graph.obj: $(top_srcdir)/src/graph/contig_graph.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_graph.obj -MD -MP -MF $(DEPDIR)/contig_graph.Tpo -c -o contig_graph.obj `if test -f '$(top_srcdir)/src/graph/contig_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/contig_graph.Tpo $(DEPDIR)/contig_graph.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_graph.cpp' object='contig_graph.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_graph.obj `if test -f '$(top_srcdir)/src/graph/contig_graph.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_graph.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_graph.cpp'; fi`
hash_graph_branch_group.o: $(top_srcdir)/src/graph/hash_graph_branch_group.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph_branch_group.o -MD -MP -MF $(DEPDIR)/hash_graph_branch_group.Tpo -c -o hash_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph_branch_group.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph_branch_group.Tpo $(DEPDIR)/hash_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' object='hash_graph_branch_group.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph_branch_group.o `test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/hash_graph_branch_group.cpp
hash_graph_branch_group.obj: $(top_srcdir)/src/graph/hash_graph_branch_group.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT hash_graph_branch_group.obj -MD -MP -MF $(DEPDIR)/hash_graph_branch_group.Tpo -c -o hash_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/hash_graph_branch_group.Tpo $(DEPDIR)/hash_graph_branch_group.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/hash_graph_branch_group.cpp' object='hash_graph_branch_group.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o hash_graph_branch_group.obj `if test -f '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/hash_graph_branch_group.cpp'; fi`
contig_info.o: $(top_srcdir)/src/graph/contig_info.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_info.o -MD -MP -MF $(DEPDIR)/contig_info.Tpo -c -o contig_info.o `test -f '$(top_srcdir)/src/graph/contig_info.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_info.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/contig_info.Tpo $(DEPDIR)/contig_info.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_info.cpp' object='contig_info.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_info.o `test -f '$(top_srcdir)/src/graph/contig_info.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/graph/contig_info.cpp
contig_info.obj: $(top_srcdir)/src/graph/contig_info.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT contig_info.obj -MD -MP -MF $(DEPDIR)/contig_info.Tpo -c -o contig_info.obj `if test -f '$(top_srcdir)/src/graph/contig_info.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_info.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_info.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/contig_info.Tpo $(DEPDIR)/contig_info.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/graph/contig_info.cpp' object='contig_info.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o contig_info.obj `if test -f '$(top_srcdir)/src/graph/contig_info.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/graph/contig_info.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/graph/contig_info.cpp'; fi`
local_assembler.o: $(top_srcdir)/src/assembly/local_assembler.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT local_assembler.o -MD -MP -MF $(DEPDIR)/local_assembler.Tpo -c -o local_assembler.o `test -f '$(top_srcdir)/src/assembly/local_assembler.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/local_assembler.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/local_assembler.Tpo $(DEPDIR)/local_assembler.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/assembly/local_assembler.cpp' object='local_assembler.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o local_assembler.o `test -f '$(top_srcdir)/src/assembly/local_assembler.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/local_assembler.cpp
local_assembler.obj: $(top_srcdir)/src/assembly/local_assembler.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT local_assembler.obj -MD -MP -MF $(DEPDIR)/local_assembler.Tpo -c -o local_assembler.obj `if test -f '$(top_srcdir)/src/assembly/local_assembler.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/local_assembler.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/local_assembler.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/local_assembler.Tpo $(DEPDIR)/local_assembler.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/assembly/local_assembler.cpp' object='local_assembler.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o local_assembler.obj `if test -f '$(top_srcdir)/src/assembly/local_assembler.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/local_assembler.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/local_assembler.cpp'; fi`
assembly_utility.o: $(top_srcdir)/src/assembly/assembly_utility.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT assembly_utility.o -MD -MP -MF $(DEPDIR)/assembly_utility.Tpo -c -o assembly_utility.o `test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/assembly_utility.cpp
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/assembly_utility.Tpo $(DEPDIR)/assembly_utility.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/assembly/assembly_utility.cpp' object='assembly_utility.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o assembly_utility.o `test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp' || echo '$(srcdir)/'`$(top_srcdir)/src/assembly/assembly_utility.cpp
assembly_utility.obj: $(top_srcdir)/src/assembly/assembly_utility.cpp
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT assembly_utility.obj -MD -MP -MF $(DEPDIR)/assembly_utility.Tpo -c -o assembly_utility.obj `if test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/assembly_utility.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/assembly_utility.cpp'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/assembly_utility.Tpo $(DEPDIR)/assembly_utility.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/src/assembly/assembly_utility.cpp' object='assembly_utility.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o assembly_utility.obj `if test -f '$(top_srcdir)/src/assembly/assembly_utility.cpp'; then $(CYGPATH_W) '$(top_srcdir)/src/assembly/assembly_utility.cpp'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/assembly/assembly_utility.cpp'; fi`
gtest_main.o: $(top_srcdir)/gtest_src/gtest/gtest_main.cc
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest_main.o -MD -MP -MF $(DEPDIR)/gtest_main.Tpo -c -o gtest_main.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest_main.cc
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/gtest_main.Tpo $(DEPDIR)/gtest_main.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest_main.cc' object='gtest_main.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest_main.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest_main.cc
gtest_main.obj: $(top_srcdir)/gtest_src/gtest/gtest_main.cc
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest_main.obj -MD -MP -MF $(DEPDIR)/gtest_main.Tpo -c -o gtest_main.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/gtest_main.Tpo $(DEPDIR)/gtest_main.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest_main.cc' object='gtest_main.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest_main.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest_main.cc'; fi`
gtest-all.o: $(top_srcdir)/gtest_src/gtest/gtest-all.cc
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest-all.o -MD -MP -MF $(DEPDIR)/gtest-all.Tpo -c -o gtest-all.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest-all.cc
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/gtest-all.Tpo $(DEPDIR)/gtest-all.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest-all.cc' object='gtest-all.o' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest-all.o `test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc' || echo '$(srcdir)/'`$(top_srcdir)/gtest_src/gtest/gtest-all.cc
gtest-all.obj: $(top_srcdir)/gtest_src/gtest/gtest-all.cc
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT gtest-all.obj -MD -MP -MF $(DEPDIR)/gtest-all.Tpo -c -o gtest-all.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; fi`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/gtest-all.Tpo $(DEPDIR)/gtest-all.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$(top_srcdir)/gtest_src/gtest/gtest-all.cc' object='gtest-all.obj' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o gtest-all.obj `if test -f '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; then $(CYGPATH_W) '$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/gtest_src/gtest/gtest-all.cc'; fi`
.cpp.o:
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ $<
.cpp.obj:
@am__fastdepCXX_TRUE@ $(AM_V_CXX)$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
@am__fastdepCXX_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ $(AM_V_CXX)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCXX_FALSE@ $(AM_V_CXX@am__nodep@)$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
ID: $(am__tagged_files)
$(am__define_uniq_tagged_files); mkid -fID $$unique
tags: tags-am
TAGS: tags
tags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
set x; \
here=`pwd`; \
$(am__define_uniq_tagged_files); \
shift; \
if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
test -n "$$unique" || unique=$$empty_fix; \
if test $$# -gt 0; then \
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
"$$@" $$unique; \
else \
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
$$unique; \
fi; \
fi
ctags: ctags-am
CTAGS: ctags
ctags-am: $(TAGS_DEPENDENCIES) $(am__tagged_files)
$(am__define_uniq_tagged_files); \
test -z "$(CTAGS_ARGS)$$unique" \
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
$$unique
GTAGS:
here=`$(am__cd) $(top_builddir) && pwd` \
&& $(am__cd) $(top_srcdir) \
&& gtags -i $(GTAGS_ARGS) "$$here"
cscopelist: cscopelist-am
cscopelist-am: $(am__tagged_files)
list='$(am__tagged_files)'; \
case "$(srcdir)" in \
[\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \
*) sdir=$(subdir)/$(srcdir) ;; \
esac; \
for i in $$list; do \
if test -f "$$i"; then \
echo "$(subdir)/$$i"; \
else \
echo "$$sdir/$$i"; \
fi; \
done >> $(top_builddir)/cscope.files
distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
distdir: $(DISTFILES)
@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
list='$(DISTFILES)'; \
dist_files=`for file in $$list; do echo $$file; done | \
sed -e "s|^$$srcdirstrip/||;t" \
-e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
case $$dist_files in \
*/*) $(MKDIR_P) `echo "$$dist_files" | \
sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
sort -u` ;; \
esac; \
for file in $$dist_files; do \
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
if test -d $$d/$$file; then \
dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
if test -d "$(distdir)/$$file"; then \
find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
else \
test -f "$(distdir)/$$file" \
|| cp -p $$d/$$file "$(distdir)/$$file" \
|| exit 1; \
fi; \
done
check-am: all-am
check: check-am
all-am: Makefile $(LIBRARIES)
installdirs:
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-am
install-strip:
if test -z '$(STRIP)'; then \
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
install; \
else \
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
"INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
fi
mostlyclean-generic:
clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
clean: clean-am
clean-am: clean-generic clean-noinstLIBRARIES mostlyclean-am
distclean: distclean-am
-rm -rf ./$(DEPDIR)
-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
distclean-tags
dvi: dvi-am
dvi-am:
html: html-am
html-am:
info: info-am
info-am:
install-data-am:
install-dvi: install-dvi-am
install-dvi-am:
install-exec-am:
install-html: install-html-am
install-html-am:
install-info: install-info-am
install-info-am:
install-man:
install-pdf: install-pdf-am
install-pdf-am:
install-ps: install-ps-am
install-ps-am:
installcheck-am:
maintainer-clean: maintainer-clean-am
-rm -rf ./$(DEPDIR)
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-am
mostlyclean-am: mostlyclean-compile mostlyclean-generic
pdf: pdf-am
pdf-am:
ps: ps-am
ps-am:
uninstall-am:
.MAKE: install-am install-strip
.PHONY: CTAGS GTAGS TAGS all all-am check check-am clean clean-generic \
clean-noinstLIBRARIES cscopelist-am ctags ctags-am distclean \
distclean-compile distclean-generic distclean-tags distdir dvi \
dvi-am html html-am info info-am install install-am \
install-data install-data-am install-dvi install-dvi-am \
install-exec install-exec-am install-html install-html-am \
install-info install-info-am install-man install-pdf \
install-pdf-am install-ps install-ps-am install-strip \
installcheck installcheck-am installdirs maintainer-clean \
maintainer-clean-generic mostlyclean mostlyclean-compile \
mostlyclean-generic pdf pdf-am ps ps-am tags tags-am uninstall \
uninstall-am
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
|