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"""Packaging for idseq-bench module.
References:
https://packaging.python.org/guides/distributing-packages-using-setuptools/
https://github.com/pypa/sampleproject
"""
from os import path
from setuptools import setup, find_packages
import idseq_bench
local = path.abspath(path.dirname(__file__))
# Get the long description from the README file
with open(path.join(local, 'README.md'), encoding='utf-8') as f:
long_description = f.read()
setup(
name='idseq-bench',
# Versions should comply with PEP 440:
# https://www.python.org/dev/peps/pep-0440/
version=idseq_bench.__version__,
description='Tools to create and scores MGS benchmarks',
long_description=long_description,
long_description_content_type='text/markdown',
url='https://github.com/chanzuckerberg/idseq-bench',
author='Chan Zuckerberg Initiative',
author_email='help@idseq.net',
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Metagenomic Researchers',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
],
keywords='idseq benchmark metrics',
py_modules=['idseq-bench'],
python_requires='>=3.6, <4',
install_requires=[
'InSilicoSeq>=1.4.2',
'ncbi-acc-download',
'numpy',
'scikit-learn',
'smart_open'
],
entry_points={
'console_scripts': [
'idseq-bench-compare=idseq_bench.compare:main',
'idseq-bench-generate=idseq_bench.generate:main',
'idseq-bench-score=idseq_bench.score:main',
],
},
packages=find_packages(),
project_urls={
'Docs': 'https://github.com/chanzuckerberg/idseq-bench',
'Bug Reports': 'https://github.com/chanzuckerberg/idseq-bench/issues',
'Sign up for IDseq': 'https://idseq.net/',
},
)
|
