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#!/bin/bash
set -e
pkg="igor"
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
gunzip -r *
TMP_DIR=`mktemp -d /tmp/${pkg}-test-output.XXXXXX`
ls
for f in *;
do
echo "=================== BEGIN TEST $f =============================="
igor -set_wd $TMP_DIR -batch foo -read_seqs $f
igor -set_wd $TMP_DIR -batch foo -species human -chain beta -align --all
rm -rf $TMP_DIR/*
echo "==========================PASSED================================"
done
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