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/*
* Counter.cpp
*
* Created on: Aug 19, 2016
* Author: Quentin Marcou
*
* This source code is distributed as part of the IGoR software.
* IGoR (Inference and Generation of Repertoires) is a versatile software to analyze and model immune receptors
* generation, selection, mutation and all other processes.
* Copyright (C) 2017 Quentin Marcou
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>.
*/
#include "Counter.h"
using namespace std;
/*
* By default the counter will be output in /tmp
* I hope you're using a UNIX based system
*/
Counter::Counter(const string& path /* = "/tmp/"*/, bool last_iter /* = false*/):path_to_file(path),last_iter_only(last_iter),fstreams_created(false){
//Make sure the given path is a folder
if (path_to_file.back() != '/'){
path_to_file.push_back('/');
}
}
Counter::~Counter() {
// TODO Auto-generated destructor stub
}
void Counter::count_scenario (long double scenario_seq_joint_proba , double scenario_probability , const string& original_sequence , Seq_type_str_p_map& constructed_sequences , const Seq_offsets_map& seq_offsets , const unordered_map<tuple<Event_type,Gene_class,Seq_side>, shared_ptr<Rec_Event>>& events_map , Mismatch_vectors_map& mismatches_lists ){
//Do nothing
//This is a virtual method in case the counter does not have anything to count at the scenario level
}
void Counter::count_sequence(double seq_likelihood , const Model_marginals& single_seq_marginals , const Model_Parms& single_seq_model_parms){
//Do nothing
//This is a virtual method in case the counter does not have anything to count at the sequence level
}
void Counter::add_to_counter(shared_ptr<Counter> other){
if(this->type() != other->type()){
throw invalid_argument("Cannot add counters of type " + this->type() +" and " + other->type() );
}
else{
this->add_checked(other);
return;
}
}
/*
* Dump sequence specific information to file
* This method should also clean all the counters for the next sequence
*/
void Counter::dump_sequence_data(int seq_index , int iteration_n){
//Do nothing
}
void Counter::dump_data_summary(int iteration_n){
//Do nothing
}
void Counter::set_path_to_files(const string& new_path){
if(fstreams_created){
throw runtime_error("Cannot change file path when file streams have already been created (in Counter::set_path_to_files)");
}
else{
this->path_to_file = new_path;
}
}
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