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/*
* Counter.h
*
* Created on: Aug 19, 2016
* Author: Quentin Marcou
*
* This source code is distributed as part of the IGoR software.
* IGoR (Inference and Generation of Repertoires) is a versatile software to analyze and model immune receptors
* generation, selection, mutation and all other processes.
* Copyright (C) 2017 Quentin Marcou
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>.
*/
#ifndef GENERATIVE_MODEL_SRC_COUNTER_H_
#define GENERATIVE_MODEL_SRC_COUNTER_H_
#include <string>
#include <memory>
#include <fstream>
#include "Model_marginals.h"
#include "Model_Parms.h"
#include "Rec_Event.h"
#include "IntStr.h"
#include "Utils.h"
/**
* \class Counter Counter.h
* \brief Scenario statistics recording abstract class
* \author Q.Marcou
* \version 1.0
*
* The Counter abstract class provides an interface to collect individual scenarios statistics and aggregate them in various ways.
*/
class Counter {
public:
Counter(const std::string& path = "/tmp/", bool last_iter = false);
virtual ~Counter();
virtual std::string type() const =0;
virtual void initialize_counter(const Model_Parms& , const Model_marginals&) = 0;
virtual void count_scenario(long double , double ,const std::string& , Seq_type_str_p_map& , const Seq_offsets_map& , const std::unordered_map<std::tuple<Event_type,Gene_class,Seq_side>, std::shared_ptr<Rec_Event>>& , Mismatch_vectors_map& );
virtual void count_sequence(double , const Model_marginals& ,const Model_Parms&);
virtual void add_to_counter(std::shared_ptr<Counter>);
virtual void add_checked(std::shared_ptr<Counter>) =0;
virtual void dump_sequence_data(int , int);
virtual void dump_data_summary(int);
bool is_last_iter_only() const {return last_iter_only;}
std::string get_path_to_files() const {return path_to_file;}
void set_path_to_files(const std::string& new_path );
virtual std::shared_ptr<Counter> copy() const = 0;
protected:
std::string path_to_file;
bool last_iter_only;
bool fstreams_created;
//TODO create a unique identifier of the counter? Make something up to prevent to have twice the same counter??
};
#endif /* GENERATIVE_MODEL_SRC_COUNTER_H_ */
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