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/* -*- mode: C -*- */
/*
IGraph library.
Copyright (C) 2009-2012 Gabor Csardi <csardi.gabor@gmail.com>
334 Harvard street, Cambridge, MA 02139 USA
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
02110-1301 USA
*/
#ifndef IGRAPH_SPARSEMAT_H
#define IGRAPH_SPARSEMAT_H
#include "igraph_decls.h"
#include "igraph_error.h"
#include "igraph_types.h"
#include "igraph_vector.h"
#include "igraph_datatype.h"
#include "igraph_arpack.h"
#include <stdio.h>
__BEGIN_DECLS
/*
* These types are private to igraph, and customized to use igraph_integer_t.
* Do not attempt to access them using a separate copy of the CXSparse library.
* Use the public igraph_sparsemat_... types instead.
*/
struct cs_igraph_sparse;
struct cs_igraph_symbolic;
struct cs_igraph_numeric;
typedef struct {
struct cs_igraph_sparse *cs;
} igraph_sparsemat_t;
typedef struct {
struct cs_igraph_symbolic *symbolic;
} igraph_sparsemat_symbolic_t;
typedef struct {
struct cs_igraph_numeric *numeric;
} igraph_sparsemat_numeric_t;
typedef enum { IGRAPH_SPARSEMAT_TRIPLET,
IGRAPH_SPARSEMAT_CC
} igraph_sparsemat_type_t;
typedef struct {
const igraph_sparsemat_t *mat;
igraph_integer_t pos;
igraph_integer_t col;
} igraph_sparsemat_iterator_t;
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_init(
igraph_sparsemat_t *A, igraph_integer_t rows, igraph_integer_t cols,
igraph_integer_t nzmax
);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_init_copy(
igraph_sparsemat_t *to, const igraph_sparsemat_t *from);
IGRAPH_EXPORT void igraph_sparsemat_destroy(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_realloc(igraph_sparsemat_t *A, igraph_integer_t nzmax);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_init_eye(igraph_sparsemat_t *A,
igraph_integer_t n, igraph_integer_t nzmax,
igraph_real_t value, igraph_bool_t compress);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_init_diag(igraph_sparsemat_t *A,
igraph_integer_t nzmax, const igraph_vector_t *values,
igraph_bool_t compress);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_nrow(const igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_ncol(const igraph_sparsemat_t *B);
IGRAPH_EXPORT igraph_sparsemat_type_t igraph_sparsemat_type(const igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_bool_t igraph_sparsemat_is_triplet(const igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_bool_t igraph_sparsemat_is_cc(const igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_permute(const igraph_sparsemat_t *A,
const igraph_vector_int_t *p,
const igraph_vector_int_t *q,
igraph_sparsemat_t *res);
IGRAPH_EXPORT igraph_real_t igraph_sparsemat_get(
const igraph_sparsemat_t *A, igraph_integer_t row, igraph_integer_t col
);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_index(const igraph_sparsemat_t *A,
const igraph_vector_int_t *p,
const igraph_vector_int_t *q,
igraph_sparsemat_t *res,
igraph_real_t *constres);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_entry(igraph_sparsemat_t *A,
igraph_integer_t row, igraph_integer_t col, igraph_real_t elem);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_compress(const igraph_sparsemat_t *A,
igraph_sparsemat_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_transpose(
const igraph_sparsemat_t *A, igraph_sparsemat_t *res
);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_is_symmetric(const igraph_sparsemat_t *A, igraph_bool_t *result);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_dupl(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_fkeep(igraph_sparsemat_t *A,
igraph_integer_t (*fkeep)(igraph_integer_t, igraph_integer_t, igraph_real_t, void*),
void *other);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_dropzeros(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_droptol(igraph_sparsemat_t *A, igraph_real_t tol);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_multiply(const igraph_sparsemat_t *A,
const igraph_sparsemat_t *B,
igraph_sparsemat_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_add(const igraph_sparsemat_t *A,
const igraph_sparsemat_t *B,
igraph_real_t alpha,
igraph_real_t beta,
igraph_sparsemat_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_gaxpy(const igraph_sparsemat_t *A,
const igraph_vector_t *x,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_lsolve(const igraph_sparsemat_t *A,
const igraph_vector_t *b,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_ltsolve(const igraph_sparsemat_t *A,
const igraph_vector_t *b,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_usolve(const igraph_sparsemat_t *A,
const igraph_vector_t *b,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_utsolve(const igraph_sparsemat_t *A,
const igraph_vector_t *b,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_cholsol(const igraph_sparsemat_t *A,
const igraph_vector_t *b,
igraph_vector_t *res,
igraph_integer_t order);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_lusol(const igraph_sparsemat_t *A,
const igraph_vector_t *b,
igraph_vector_t *res,
igraph_integer_t order,
igraph_real_t tol);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_print(const igraph_sparsemat_t *A,
FILE *outstream);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat(igraph_t *graph, const igraph_sparsemat_t *A,
igraph_bool_t directed);
IGRAPH_EXPORT igraph_error_t igraph_weighted_sparsemat(igraph_t *graph, const igraph_sparsemat_t *A,
igraph_bool_t directed, const char *attr,
igraph_bool_t loops);
IGRAPH_EXPORT igraph_error_t igraph_matrix_as_sparsemat(igraph_sparsemat_t *res,
const igraph_matrix_t *mat,
igraph_real_t tol);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_as_matrix(igraph_matrix_t *res,
const igraph_sparsemat_t *spmat);
typedef enum { IGRAPH_SPARSEMAT_SOLVE_LU,
IGRAPH_SPARSEMAT_SOLVE_QR
} igraph_sparsemat_solve_t;
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_arpack_rssolve(const igraph_sparsemat_t *A,
igraph_arpack_options_t *options,
igraph_arpack_storage_t *storage,
igraph_vector_t *values,
igraph_matrix_t *vectors,
igraph_sparsemat_solve_t solvemethod);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_arpack_rnsolve(const igraph_sparsemat_t *A,
igraph_arpack_options_t *options,
igraph_arpack_storage_t *storage,
igraph_matrix_t *values,
igraph_matrix_t *vectors);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_lu(const igraph_sparsemat_t *A,
const igraph_sparsemat_symbolic_t *dis,
igraph_sparsemat_numeric_t *din, double tol);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_qr(const igraph_sparsemat_t *A,
const igraph_sparsemat_symbolic_t *dis,
igraph_sparsemat_numeric_t *din);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_luresol(const igraph_sparsemat_symbolic_t *dis,
const igraph_sparsemat_numeric_t *din,
const igraph_vector_t *b,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_qrresol(const igraph_sparsemat_symbolic_t *dis,
const igraph_sparsemat_numeric_t *din,
const igraph_vector_t *b,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_symbqr(igraph_integer_t order, const igraph_sparsemat_t *A,
igraph_sparsemat_symbolic_t *dis);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_symblu(igraph_integer_t order, const igraph_sparsemat_t *A,
igraph_sparsemat_symbolic_t *dis);
IGRAPH_EXPORT void igraph_sparsemat_symbolic_destroy(igraph_sparsemat_symbolic_t *dis);
IGRAPH_EXPORT void igraph_sparsemat_numeric_destroy(igraph_sparsemat_numeric_t *din);
IGRAPH_EXPORT igraph_real_t igraph_sparsemat_max(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_real_t igraph_sparsemat_min(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_minmax(igraph_sparsemat_t *A,
igraph_real_t *min, igraph_real_t *max);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_count_nonzero(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_count_nonzerotol(igraph_sparsemat_t *A,
igraph_real_t tol);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_rowsums(const igraph_sparsemat_t *A,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_colsums(const igraph_sparsemat_t *A,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_rowmins(igraph_sparsemat_t *A,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_colmins(igraph_sparsemat_t *A,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_rowmaxs(igraph_sparsemat_t *A,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_colmaxs(igraph_sparsemat_t *A,
igraph_vector_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_which_min_rows(igraph_sparsemat_t *A,
igraph_vector_t *res,
igraph_vector_int_t *pos);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_which_min_cols(igraph_sparsemat_t *A,
igraph_vector_t *res,
igraph_vector_int_t *pos);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_scale(igraph_sparsemat_t *A, igraph_real_t by);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_add_rows(igraph_sparsemat_t *A, igraph_integer_t n);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_add_cols(igraph_sparsemat_t *A, igraph_integer_t n);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_resize(igraph_sparsemat_t *A,
igraph_integer_t nrow, igraph_integer_t ncol, igraph_integer_t nzmax);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_nonzero_storage(const igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_getelements(const igraph_sparsemat_t *A,
igraph_vector_int_t *i,
igraph_vector_int_t *j,
igraph_vector_t *x);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_getelements_sorted(const igraph_sparsemat_t *A,
igraph_vector_int_t *i,
igraph_vector_int_t *j,
igraph_vector_t *x);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_scale_rows(igraph_sparsemat_t *A,
const igraph_vector_t *fact);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_scale_cols(igraph_sparsemat_t *A,
const igraph_vector_t *fact);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_multiply_by_dense(const igraph_sparsemat_t *A,
const igraph_matrix_t *B,
igraph_matrix_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_dense_multiply(const igraph_matrix_t *A,
const igraph_sparsemat_t *B,
igraph_matrix_t *res);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_view(igraph_sparsemat_t *A, igraph_integer_t nzmax, igraph_integer_t m, igraph_integer_t n,
igraph_integer_t *p, igraph_integer_t *i, igraph_real_t *x, igraph_integer_t nz);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_sort(const igraph_sparsemat_t *A,
igraph_sparsemat_t *sorted);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_nzmax(const igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_neg(igraph_sparsemat_t *A);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_normalize_cols(igraph_sparsemat_t *sparsemat,
igraph_bool_t allow_zeros);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_normalize_rows(igraph_sparsemat_t *sparsemat,
igraph_bool_t allow_zeros);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_iterator_init(
igraph_sparsemat_iterator_t *it, const igraph_sparsemat_t *sparsemat
);
IGRAPH_EXPORT igraph_error_t igraph_sparsemat_iterator_reset(igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT igraph_bool_t igraph_sparsemat_iterator_end(const igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_iterator_row(const igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_iterator_col(const igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_iterator_idx(const igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT igraph_real_t igraph_sparsemat_iterator_get(const igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT igraph_integer_t igraph_sparsemat_iterator_next(igraph_sparsemat_iterator_t *it);
IGRAPH_EXPORT IGRAPH_DEPRECATED igraph_error_t igraph_sparsemat_copy(
igraph_sparsemat_t *to, const igraph_sparsemat_t *from);
IGRAPH_EXPORT IGRAPH_DEPRECATED igraph_error_t igraph_sparsemat_diag(
igraph_sparsemat_t *A, igraph_integer_t nzmax, const igraph_vector_t *values,
igraph_bool_t compress);
IGRAPH_EXPORT IGRAPH_DEPRECATED igraph_error_t igraph_sparsemat_eye(
igraph_sparsemat_t *A, igraph_integer_t n, igraph_integer_t nzmax,
igraph_real_t value, igraph_bool_t compress);
__END_DECLS
#endif
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