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#!/bin/sh
prefix=`dirname $(readlink -f $0 || echo $0)`
# Check whether or not to use the bundled JDK
if [ -d "${prefix}/jdk-11" ]; then
echo echo "Using bundled JDK."
JAVA_HOME="${prefix}/jdk-11"
PATH=$JAVA_HOME/bin:$PATH
else
echo "Using system JDK."
java -version
fi
# Check if there is a user-specified Java arguments file
if [ -e "$HOME/.igv/java_arguments" ]; then
java -showversion --module-path="${prefix}/lib" -Xmx1500m \
@${prefix}/igv.args \
-Dsun.java2d.uiScale=2 \
@"$HOME/.igv/java_arguments" \
--module=org.igv/org.broad.igv.tools.IgvTools gui
else
java -showversion --module-path="${prefix}/lib" -Xmx1500m \
@${prefix}/igv.args \
-Dsun.java2d.uiScale=2 \
--module=org.igv/org.broad.igv.tools.IgvTools gui
fi
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