File: StaticLinkExamples.html

package info (click to toggle)
igv 2.16.0%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 136,036 kB
  • sloc: java: 120,578; xml: 9,270; sh: 179; javascript: 62; makefile: 25
file content (114 lines) | stat: -rw-r--r-- 11,817 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
 
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
        "http://www.w3.org/TR/html4/loose.dtd">
<html>
<head>
    <title>IGV Web links</title>
</head>
<body>

<h2>IGV desktop links</h2>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&merge=false&locus=myc">
        Load merge=false</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&merge=true&locus=myc">
        Load merge=true</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&merge=ask&locus=myc">
        Load merge=ask</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&locus=chr1&name=GM12878+loops">
        Load with name</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&locus=chr1&name=GM12878+loops&dup=true">
        Load with name -- allow dups</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https%3A%2F%2Fs3.amazonaws.com%2Figv.org.test%2Fdata%2Fgm12878_loops.bedpe.gz&locus=chr1&name=GM12878%20loops">
        Load with name - url encoded</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&locus=chr1&name=GM12878+loops;&merge=false">
        Load with name into new session</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&locus=chr1&name=GM12878+loops;&merge=true">
        Load with name into current session</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://data.broadinstitute.org/igvdata/annotations/hg19/dbSnp/snp137.hg19.bed.gz&index=https://data.broadinstitute.org/igvdata/annotations/hg19/dbSnp/snp137.hg19.bed.gz.tbi&amp;locus=chr1&amp;name=SNPs">
        Load with index</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://data.broadinstitute.org/igvdata/annotations/hg19/dbSnp/snp137.hg19.bed.gz,gs://genomics-public-data/platinum-genomes/bam/NA12877_S1.bam&index=https://data.broadinstitute.org/igvdata/annotations/hg19/dbSnp/snp137.hg19.bed.gz.tbi,gs://genomics-public-data/platinum-genomes/bam/NA12877_S1.bam.bai&locus=chr1&name=SNPs,Alignments&locus=myc">
        Load with index - multiple files</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https%3A%2F%2Fdata.broadinstitute.org%2Figvdata%2Fannotations%2Fhg19%2FdbSnp%2Fsnp137.hg19.bed.gz%2Cgs%3A%2F%2Fgenomics-public-data%2Fplatinum-genomes%2Fbam%2FNA12877_S1.bam&index=https%3A%2F%2Fdata.broadinstitute.org%2Figvdata%2Fannotations%2Fhg19%2FdbSnp%2Fsnp137.hg19.bed.gz.tbi%2Cgs%3A%2F%2Fgenomics-public-data%2Fplatinum-genomes%2Fbam%2FNA12877_S1.bam.bai&locus=chr1&name=SNPs%2CAlignments&locus=myc">
        Load with index - multiple files url encoded</a>
</p>
<p>
    <a href="http://localhost:60151/load?genome=https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/hg19.fasta">
        Load fasta</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.demo/sessions/arcs_session.xml">
        Load session</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.demo/sessions/arcs_session.xml&merge=true">
        Load session</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://s3.amazonaws.com/igv.org.demo/sessions/arcs_session.xml&locus=chr22">
        Load session with initial locus (chr22)</a>
</p>

<p>
    <a href="http://localhost:60151/load?file=https://s3.us-east-1.amazonaws.com/igv.org.test/data/vcf/D5227.NexPond-359781.vcf?response-content-disposition=inline&X-Amz-Security-Token=IQoJb3JpZ2luX2VjEOv%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLXdlc3QtMSJIMEYCIQDkHo%2FNc6ZwabehxRrqdzmJtdZbMwNHbBW2NNqYKTr1GQIhAJrT0sCtrVeI1R0aJ52vAfBstlevtnQuC%2FixH8blSsaqKvsCCCQQAhoMODIyNjAxMzg0MDcyIgxEwCnUFc2k0EFiWz0q2ALya0Jv9BSdQcOf%2BQ4jwZkv0IWCjuxLp8sk4bOSN5R%2BjfR%2BAFwc3g%2F%2BcSmloKrQRvJ7zHkUXR2Tn%2BgWnHG4jYxdPkIjHFJEVEbQMrxHUsYVZYPMiNgLRcp0nWD9Ovz3qwSAE1xmjy2uwWlw7ZVoUHAZnd61BBZeQS%2FdUo5m5S0zWeowJKBEg%2F6oatH0CDhVUUDlbPiBdk%2F8wZgO4%2FV%2BYCwrFA7481jHjCnZK5OPoewMn1ailHrdg3jbIOfkwzyWDoK8qLI3O3SzD865vvjPxT7RLTyNBZi4d0g9XrFVYZvVcidzuFDyblKGTYCiCpG7gm7ubLWTbT%2BMI5xCLKOYrwi4prK3%2FRN8i6KnRANun1SGwTOOOeMsi0n18zikQVUGo%2FbaJG0zj%2FSuqMzzP0%2FZ%2Bugz9e7LoyYxUMSVyrJzhfDqaoz2xrG7h3T%2Bd1YW7ibqJsM1Snu6C8cEtjCyod2PBjqyAubkAet%2BJKWa3mU0k7Ezw%2FRi38wNU%2Bm9xm0bpiTY55MsIVYV8iCmrTJn7kreVR8xzgAsf0vl53VTmVPOXC3zF8%2FUZbM8LYrOsbOq1pe2hqFL3eb98f8lfkqFNrp9K6KKu1X6XTX6DBWzOIRvsAkcTRAtqyFozVTP6Fp5MtFc7ky5G7MNST%2BG0xqQMfXwX%2F8XL%2FMTVg5%2Frpv6tWtTXaWgtxpsgICeBR0bsfeylnh9nhBQAfTA3hF%2BrvM3sODhLciCNEzUG3qzQr8S7BUfpPr8UXnX7klHDnU%2B50EKQq4yDsKQ528zMxqu3HxIQrirfD3VUIeMVEZ5LLqS%2Fd2yXIDMHmVn6cgcB37EfXXMfL5n8GD5CMrX27OqJLxUkte8upohyOjBgokCDAoFZL8W1MznR%2BFTFA%3D%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20220131T032614Z&X-Amz-SignedHeaders=host&X-Amz-Expires=604800&X-Amz-Credential=ASIA37BW5ACED3SE27NI%2F20220131%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=fab2496d7220efeae19a588f8f6d4afb18763e80f16264f426642049a54d18e9&index=https://s3.us-east-1.amazonaws.com/igv.org.test/data/vcf/D5227.NexPond-359781.vcf.idx?response-content-disposition=inline&X-Amz-Security-Token=IQoJb3JpZ2luX2VjEOv%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLXdlc3QtMSJIMEYCIQDkHo%2FNc6ZwabehxRrqdzmJtdZbMwNHbBW2NNqYKTr1GQIhAJrT0sCtrVeI1R0aJ52vAfBstlevtnQuC%2FixH8blSsaqKvsCCCQQAhoMODIyNjAxMzg0MDcyIgxEwCnUFc2k0EFiWz0q2ALya0Jv9BSdQcOf%2BQ4jwZkv0IWCjuxLp8sk4bOSN5R%2BjfR%2BAFwc3g%2F%2BcSmloKrQRvJ7zHkUXR2Tn%2BgWnHG4jYxdPkIjHFJEVEbQMrxHUsYVZYPMiNgLRcp0nWD9Ovz3qwSAE1xmjy2uwWlw7ZVoUHAZnd61BBZeQS%2FdUo5m5S0zWeowJKBEg%2F6oatH0CDhVUUDlbPiBdk%2F8wZgO4%2FV%2BYCwrFA7481jHjCnZK5OPoewMn1ailHrdg3jbIOfkwzyWDoK8qLI3O3SzD865vvjPxT7RLTyNBZi4d0g9XrFVYZvVcidzuFDyblKGTYCiCpG7gm7ubLWTbT%2BMI5xCLKOYrwi4prK3%2FRN8i6KnRANun1SGwTOOOeMsi0n18zikQVUGo%2FbaJG0zj%2FSuqMzzP0%2FZ%2Bugz9e7LoyYxUMSVyrJzhfDqaoz2xrG7h3T%2Bd1YW7ibqJsM1Snu6C8cEtjCyod2PBjqyAubkAet%2BJKWa3mU0k7Ezw%2FRi38wNU%2Bm9xm0bpiTY55MsIVYV8iCmrTJn7kreVR8xzgAsf0vl53VTmVPOXC3zF8%2FUZbM8LYrOsbOq1pe2hqFL3eb98f8lfkqFNrp9K6KKu1X6XTX6DBWzOIRvsAkcTRAtqyFozVTP6Fp5MtFc7ky5G7MNST%2BG0xqQMfXwX%2F8XL%2FMTVg5%2Frpv6tWtTXaWgtxpsgICeBR0bsfeylnh9nhBQAfTA3hF%2BrvM3sODhLciCNEzUG3qzQr8S7BUfpPr8UXnX7klHDnU%2B50EKQq4yDsKQ528zMxqu3HxIQrirfD3VUIeMVEZ5LLqS%2Fd2yXIDMHmVn6cgcB37EfXXMfL5n8GD5CMrX27OqJLxUkte8upohyOjBgokCDAoFZL8W1MznR%2BFTFA%3D%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20220131T032715Z&X-Amz-SignedHeaders=host&X-Amz-Expires=604800&X-Amz-Credential=ASIA37BW5ACED3SE27NI%2F20220131%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Signature=4b752775ed435d4f37277ffa4ffba0f5816345602e28886f410426acb622b286&locus=chr1&name=SNPs">
        Load with index - presigned</a>
</p>

<p>
    <a href="http://localhost:60151/load?file=https%3A%2F%2Fs3.us-east-1.amazonaws.com%2Figv.org.test%2Fdata%2Fvcf%2FD5227.NexPond-359781.vcf%3Fresponse-content-disposition%3Dinline%26X-Amz-Security-Token%3DIQoJb3JpZ2luX2VjEOv%252F%252F%252F%252F%252F%252F%252F%252F%252F%252FwEaCXVzLXdlc3QtMSJIMEYCIQDkHo%252FNc6ZwabehxRrqdzmJtdZbMwNHbBW2NNqYKTr1GQIhAJrT0sCtrVeI1R0aJ52vAfBstlevtnQuC%252FixH8blSsaqKvsCCCQQAhoMODIyNjAxMzg0MDcyIgxEwCnUFc2k0EFiWz0q2ALya0Jv9BSdQcOf%252BQ4jwZkv0IWCjuxLp8sk4bOSN5R%252BjfR%252BAFwc3g%252F%252BcSmloKrQRvJ7zHkUXR2Tn%252BgWnHG4jYxdPkIjHFJEVEbQMrxHUsYVZYPMiNgLRcp0nWD9Ovz3qwSAE1xmjy2uwWlw7ZVoUHAZnd61BBZeQS%252FdUo5m5S0zWeowJKBEg%252F6oatH0CDhVUUDlbPiBdk%252F8wZgO4%252FV%252BYCwrFA7481jHjCnZK5OPoewMn1ailHrdg3jbIOfkwzyWDoK8qLI3O3SzD865vvjPxT7RLTyNBZi4d0g9XrFVYZvVcidzuFDyblKGTYCiCpG7gm7ubLWTbT%252BMI5xCLKOYrwi4prK3%252FRN8i6KnRANun1SGwTOOOeMsi0n18zikQVUGo%252FbaJG0zj%252FSuqMzzP0%252FZ%252Bugz9e7LoyYxUMSVyrJzhfDqaoz2xrG7h3T%252Bd1YW7ibqJsM1Snu6C8cEtjCyod2PBjqyAubkAet%252BJKWa3mU0k7Ezw%252FRi38wNU%252Bm9xm0bpiTY55MsIVYV8iCmrTJn7kreVR8xzgAsf0vl53VTmVPOXC3zF8%252FUZbM8LYrOsbOq1pe2hqFL3eb98f8lfkqFNrp9K6KKu1X6XTX6DBWzOIRvsAkcTRAtqyFozVTP6Fp5MtFc7ky5G7MNST%252BG0xqQMfXwX%252F8XL%252FMTVg5%252Frpv6tWtTXaWgtxpsgICeBR0bsfeylnh9nhBQAfTA3hF%252BrvM3sODhLciCNEzUG3qzQr8S7BUfpPr8UXnX7klHDnU%252B50EKQq4yDsKQ528zMxqu3HxIQrirfD3VUIeMVEZ5LLqS%252Fd2yXIDMHmVn6cgcB37EfXXMfL5n8GD5CMrX27OqJLxUkte8upohyOjBgokCDAoFZL8W1MznR%252BFTFA%253D%253D%26X-Amz-Algorithm%3DAWS4-HMAC-SHA256%26X-Amz-Date%3D20220131T032614Z%26X-Amz-SignedHeaders%3Dhost%26X-Amz-Expires%3D604800%26X-Amz-Credential%3DASIA37BW5ACED3SE27NI%252F20220131%252Fus-east-1%252Fs3%252Faws4_request%26X-Amz-Signature%3Dfab2496d7220efeae19a588f8f6d4afb18763e80f16264f426642049a54d18e9&index=https%3A%2F%2Fs3.us-east-1.amazonaws.com%2Figv.org.test%2Fdata%2Fvcf%2FD5227.NexPond-359781.vcf.idx%3Fresponse-content-disposition%3Dinline%26X-Amz-Security-Token%3DIQoJb3JpZ2luX2VjEOv%252F%252F%252F%252F%252F%252F%252F%252F%252F%252FwEaCXVzLXdlc3QtMSJIMEYCIQDkHo%252FNc6ZwabehxRrqdzmJtdZbMwNHbBW2NNqYKTr1GQIhAJrT0sCtrVeI1R0aJ52vAfBstlevtnQuC%252FixH8blSsaqKvsCCCQQAhoMODIyNjAxMzg0MDcyIgxEwCnUFc2k0EFiWz0q2ALya0Jv9BSdQcOf%252BQ4jwZkv0IWCjuxLp8sk4bOSN5R%252BjfR%252BAFwc3g%252F%252BcSmloKrQRvJ7zHkUXR2Tn%252BgWnHG4jYxdPkIjHFJEVEbQMrxHUsYVZYPMiNgLRcp0nWD9Ovz3qwSAE1xmjy2uwWlw7ZVoUHAZnd61BBZeQS%252FdUo5m5S0zWeowJKBEg%252F6oatH0CDhVUUDlbPiBdk%252F8wZgO4%252FV%252BYCwrFA7481jHjCnZK5OPoewMn1ailHrdg3jbIOfkwzyWDoK8qLI3O3SzD865vvjPxT7RLTyNBZi4d0g9XrFVYZvVcidzuFDyblKGTYCiCpG7gm7ubLWTbT%252BMI5xCLKOYrwi4prK3%252FRN8i6KnRANun1SGwTOOOeMsi0n18zikQVUGo%252FbaJG0zj%252FSuqMzzP0%252FZ%252Bugz9e7LoyYxUMSVyrJzhfDqaoz2xrG7h3T%252Bd1YW7ibqJsM1Snu6C8cEtjCyod2PBjqyAubkAet%252BJKWa3mU0k7Ezw%252FRi38wNU%252Bm9xm0bpiTY55MsIVYV8iCmrTJn7kreVR8xzgAsf0vl53VTmVPOXC3zF8%252FUZbM8LYrOsbOq1pe2hqFL3eb98f8lfkqFNrp9K6KKu1X6XTX6DBWzOIRvsAkcTRAtqyFozVTP6Fp5MtFc7ky5G7MNST%252BG0xqQMfXwX%252F8XL%252FMTVg5%252Frpv6tWtTXaWgtxpsgICeBR0bsfeylnh9nhBQAfTA3hF%252BrvM3sODhLciCNEzUG3qzQr8S7BUfpPr8UXnX7klHDnU%252B50EKQq4yDsKQ528zMxqu3HxIQrirfD3VUIeMVEZ5LLqS%252Fd2yXIDMHmVn6cgcB37EfXXMfL5n8GD5CMrX27OqJLxUkte8upohyOjBgokCDAoFZL8W1MznR%252BFTFA%253D%253D%26X-Amz-Algorithm%3DAWS4-HMAC-SHA256%26X-Amz-Date%3D20220131T032715Z%26X-Amz-SignedHeaders%3Dhost%26X-Amz-Expires%3D604800%26X-Amz-Credential%3DASIA37BW5ACED3SE27NI%252F20220131%252Fus-east-1%252Fs3%252Faws4_request%26X-Amz-Signature%3D4b752775ed435d4f37277ffa4ffba0f5816345602e28886f410426acb622b286&locus=chr1&name=SNPs">
        Load with index - presigned uri encoded</a>
</p>

<p>
    <a href="http://localhost:60151/goto?locus=MYC">
        Goto locus 'MYC'</a>
</p>

<h3>Issue 1261</h3>
<p>
    <a href="http://localhost:60151/load?file=https://1000genomes.s3.amazonaws.com/phase3/data/HG01880/alignment/HG01880.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam&merge=ask&locus=chr10%3A89617063">
        Load HG01880 BAM, merge=ask</a>
</p>
<p>
    <a href="http://localhost:60151/load?file=https://1000genomes.s3.amazonaws.com/phase3/data/HG01879/alignment/HG01879.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam&merge=ask&locus=chr9%3A5443964">
        Load HG01879 BAM, merge=ask</a>
</p>

<h2>IGV web app links</h2>
<p>
    <a target="_blank"
       href="https://igv.org/app/?file=https://s3.amazonaws.com/igv.org.test/data/gm12878_loops.bedpe.gz&locus=chr1&name=GM12878+loops">
        Load with name</a>
</p>
<p>
    <a target="_blank"
       href="https://igv.org/app/?file=https://data.broadinstitute.org/igvdata/annotations/hg19/dbSnp/snp137.hg19.bed.gz&index=https://data.broadinstitute.org/igvdata/annotations/hg19/dbSnp/snp137.hg19.bed.gz.tbi&amp;locus=chr1&amp;name=SNPs">
        Load with index</a>
</p>
<p>
    <a target="_blank"
       href="https://igv.org/app/?genome=https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/hg19/hg19.fasta">
        Load fasta</a>
</p>

</body>
</html>