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#!/bin/sh
#This script is intended for launch on *nix machines
#-Xmx8g indicates 8 gb of memory.
#To adjust this (or other Java options), edit the "$HOME/.igv/java_arguments"
#file. For more info, see the README at
#https://raw.githubusercontent.com/igvteam/igv/master/scripts/readme.txt
#Add the flag -Ddevelopment = true to use features still in development
#Add the flag -Dsun.java2d.uiScale=2 for HiDPI displays
prefix=`dirname $(readlink -f $0 || echo $0)`
# Check whether or not to use the bundled JDK
if [ -d "${prefix}/jdk-17" ]; then
echo echo "Using bundled JDK."
JAVA_HOME="${prefix}/jdk-17"
PATH=$JAVA_HOME/bin:$PATH
else
echo "Using system JDK. IGV requires Java 17."
fi
# Report on Java version
java -version
# Check if there is a user-specified Java arguments file
if [ -e "$HOME/.igv/java_arguments" ]; then
java --module-path="${prefix}/lib" -Xmx8g \
@"${prefix}/igv.args" \
-Dsamjdk.snappy.disable=true \
-Dapple.laf.useScreenMenuBar=true \
-Djava.net.preferIPv4Stack=true \
-Djava.net.useSystemProxies=true \
@"$HOME/.igv/java_arguments" \
--module=org.igv/org.broad.igv.ui.Main "$@"
else
java --module-path="${prefix}/lib" -Xmx8g \
@"${prefix}/igv.args" \
-Dsamjdk.snappy.disable=true \
-Dapple.laf.useScreenMenuBar=true \
-Djava.net.preferIPv4Stack=true \
-Djava.net.useSystemProxies=true \
--module=org.igv/org.broad.igv.ui.Main "$@"
fi
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