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#!/bin/bash
#This script is intended for launching on Macs
#It is intended to be compiled be 'shc' on Mac in order to have the
#launcher be a binary executable rather than a script. You can obtain
#'sch' through MacPorts or Homebrew. Then, the steps to compile look
#like this:
# $ export CFLAGS=-mmacosx-version-min=10.10 # Pass-thru to 'cc' for backward compatibility.
# $ shc -r -f IGV.sh # The '-r' means "relaxed security" and is more portable.
# $ mv IGV.sh.x IGV # Rename the executable to the expected name.
#-Xmx8g indicates 8 gb of memory.
#To adjust this (or other Java options), edit the "$HOME/.igv/java_arguments"
#file. For more info, see the README at
#https://raw.githubusercontent.com/igvteam/igv/master/scripts/readme.txt
#Add the flag -Ddevelopment = true to use features still in development
prefix=`dirname $(readlink $0 || echo $0)`
# Check whether or not to use the bundled JDK
echo ${prefix}
if [ -d "${prefix}/../jdk-17" ]; then
echo echo "Using bundled JDK."
JAVA_HOME="${prefix}/../jdk-17"
PATH=$JAVA_HOME/bin:$PATH
else
echo "Using system JDK."
java -version
fi
# Check if there is a user-specified Java arguments file
if [ -e "$HOME/.igv/java_arguments" ]; then
EXTRA_ARGS_FILE=@"$HOME/.igv/java_arguments"
fi
exec java -showversion --module-path="${prefix}/../Java/lib" -Xmx8g \
@"${prefix}/../Java/igv.args" \
-Xdock:name="IGV" \
-Xdock:icon="${prefix}/../Resources/IGV_64.png" \
-Dapple.laf.useScreenMenuBar=true \
-Djava.net.preferIPv4Stack=true ${EXTRA_ARGS_FILE} \
--module=org.igv/org.broad.igv.ui.Main
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