1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42
|
<!--
~ The MIT License (MIT)
~
~ Copyright (c) 2007-2015 Broad Institute
~
~ Permission is hereby granted, free of charge, to any person obtaining a copy
~ of this software and associated documentation files (the "Software"), to deal
~ in the Software without restriction, including without limitation the rights
~ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
~ copies of the Software, and to permit persons to whom the Software is
~ furnished to do so, subject to the following conditions:
~
~ The above copyright notice and this permission notice shall be included in
~ all copies or substantial portions of the Software.
~
~
~ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
~ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
~ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
~ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
~ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
~ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
~ THE SOFTWARE.
-->
<!DOCTYPE cli_plugin SYSTEM "../../../src/main/resources/org/broad/igv/cli_plugin/resources/cli_plugin.dtd">
<cli_plugin api_version="alpha" plugin_version="1.0" name="cat"
id="org.broadinstitute.igv.plugin.cat">
<tool name="cat" defaultPath="cat">
<default_arg>
<arg name="Arguments" cmd_arg="" type="TEXT"/>
<arg name="Track A" cmd_arg="" type="FEATURE_TRACK"/>
<arg name="Track B" cmd_arg="" type="FEATURE_TRACK"
encodingCodec="org.broad.igv.feature.tribble.IGVBEDCodec"/>
</default_arg>
<default_output>
<output>
<parser format="bed" strict="true"/>
</output>
</default_output>
<command name="Concatenate" cmd=""/>
</tool>
</cli_plugin>
|