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<!--
~ Copyright (c) 2007-2012 The Broad Institute, Inc.
~ SOFTWARE COPYRIGHT NOTICE
~ This software and its documentation are the copyright of the Broad Institute, Inc. All rights are reserved.
~
~ This software is supplied without any warranty or guaranteed support whatsoever. The Broad Institute is not responsible for its use, misuse, or functionality.
~
~ This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
~ Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
-->
<database version="alpha"
host="genome-mysql.cse.ucsc.edu"
path="hg18"
port=""
subprotocol="mysql"
username="genome"
name="UCSC"
description="UCSC Genomic database">
<!--We require explicit column names for the chromosome and position
column names, since we query over those-->
<table name="knownGene" format="ucscgene" description="Gene prediction track"
chromoColName="chrom" posStartColName="txStart" posEndColName="txEnd"/>
<table name="affyExonTissues" format="bed" description="Core PS"
chromoColName="chrom" posStartColName="chromStart" posEndColName="chromEnd" startColIndex="2"
endColIndex="13" binColName="bin"/>
<table name="all_mrna" format="psl" description="Human mRNAs from GenBank"
chromoColName="tName" posStartColName="tStart" posEndColName="tEnd" startColIndex="2" binColName="bin"/>
<table name="snp126" format="bed" description="Polymorphism data from dbSNP"
chromoColName="chrom" posStartColName="chromStart" posEndColName="chromEnd" startColIndex="2"
endColIndex="7" binColName="bin"/>
</database>
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