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<?php
$SESSION_URL=$_GET['sessionURL'];
if($SESSION_URL == null || $SESSION_URL == "")
{
$SESSION_URL=$_GET['file'];
}
$LOCUS= urldecode($_GET['locus']);
$MAXHEAP=$_GET['maxHeapSize'];
$INITHEAP=$_GET['initialHeapSize'];
$GENOME=$_GET['genome'];
$INDEX=$_GET['index'];
$NAME=$_GET['name'];
$PREFS=$_GET['prefs'];
$DATA_FORMAT=$_GET['dataFormat'];
$USER_AGENT=$_SERVER['HTTP_USER_AGENT'];
$iPod = stripos($_SERVER['HTTP_USER_AGENT'],"iPod");
$iPhone = stripos($_SERVER['HTTP_USER_AGENT'],"iPhone");
$iPad = stripos($_SERVER['HTTP_USER_AGENT'],"iPad");
if($iPod || $iPhone || $iPad) {
$IPAD_URL = "igvipadapp://eval";
if($SESSION_URL != null && $SESSION_URL != "") {
$IPAD_URL = $IPAD_URL . "?file=". $SESSION_URL;
if($LOCUS != null && $LOCUS != "") {
$IPAD_URL = $IPAD_URL . "&locus=". $LOCUS;
}
if($DATA_FORMAT != null && $DATA_FORMAT != "") {
$IPAD_URL = $IPAD_URL . "&dataFormat=" . $DATA_FORMAT;
}
if($INDEX != null && $INDEX != "")
{
$IPAD_URL = $IPAD_URL . "&index=" . $INDEX;
}
}
else if($LOCUS != null && $LOCUS != "") {
$IPAD_URL = $IPAD_URL . "?locus=". $LOCUS;
}
header( 'Location: ' .$IPAD_URL);
}
$igv_project = htmlspecialchars($_GET['user']);
if($igv_project == null) {
$igv_project = "launcher";
}
$igv_version = "2.4";
$referred_by = $_SERVER['HTTP_USER_AGENT'];
$user_ip = $_SERVER['HTTP_X_FORWARDED_FOR'];
if ($user_ip == '') {
$user_ip = $_SERVER['REMOTE_ADDR'];
}
header('Content-type: application/x-java-jnlp-file');
header('Content-Disposition: attachment; filename="igv.jnlp"');
header("Expires: Mon, 26 Jul 1997 05:00:00 GMT"); // Date in the past
header("Last-Modified: " . gmdate("D, d M Y H:i:s") . " GMT");
header("Cache-Control: no-store, no-cache, must-revalidate");
header("Cache-control: post-check=0, pre-check=0, false");
header("Pragma: no-cache");
header("Content-Type: application/x-java-jnlp-file");
?>
<?xml version="1.0" encoding="utf-8"?>
<jnlp
spec="6.0+"
codebase="https://data.broadinstitute.org/igv/projects/2.4">
<information>
<title>IGV 2.4</title>
<vendor>The Broad Institute</vendor>
<homepage href="http://www.broadinstitute.org/igv"/>
<description>IGV Software</description>
<description kind="short">IGV</description>
<icon href="IGV_64.gif"/>
<icon kind="splash" href="IGV_64.gif"/>
<offline-allowed/>
<shortcut/>
</information>
<security>
<all-permissions/>
</security>
<update check="background"/>
<resources>
<?php
if($MAXHEAP == null || $MAXHEAP == "") {
$MAXHEAP="900m";
}
if($INITHEAP == null || $INITHEAP == "") {
$INITHEAP="256m";
}
print('<java version="1.8+" initial-heap-size="');
print($INITHEAP);
print('" max-heap-size="');
print($MAXHEAP);
print('"/>');
?>
<jar href="igv.jar" download="eager" main="true"/>
<jar href="batik-codec__V1.7.jar" download="eager"/>
<jar href="goby-io-igv__V1.0.jar" download="eager"/>
<property name="java.net.preferIPv4Stack" value="true"/>
<property name="apple.laf.useScreenMenuBar" value="true"/>
<property name="com.apple.mrj.application.growbox.intrudes" value="false"/>
<property name="com.apple.mrj.application.live-resize" value="true"/>
<property name="com.apple.macos.smallTabs" value="true"/>
<property name="http.agent" value="IGV"/>
<property name="production" value="true"/>
</resources>
<application-desc main-class="org.broad.igv.ui.Main">
<?php
if($SESSION_URL != null && $SESSION_URL != "")
{
print(" <argument>$SESSION_URL</argument>\n");
}
if($LOCUS != null && $LOCUS != "")
{
print(" <argument>$LOCUS</argument>\n");
}
if($GENOME != null && $GENOME != "")
{
print(" <argument>-g</argument>\n");
print(" <argument>$GENOME</argument>\n");
}
if($INDEX != null && $INDEX != "")
{
print(" <argument>-i</argument>\n");
print(" <argument>$INDEX</argument>\n");
}
if($NAME != null && $NAME != "")
{
print(" <argument>-n</argument>\n");
print(" <argument>$NAME</argument>\n");
}
print(" <argument>--preferences</argument>\n");
if($PREFS != null && $PREFS != "")
{
print(" <argument>$PREFS</argument>\n");
}
else {
print(" <argument>http://data.broadinstitute.org/igv/projects/current/genomespace.properties</argument>\n");
}
?>
</application-desc>
</jnlp>
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