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package ij.plugin;
import ij.*;
import ij.gui.*;
import ij.process.*;
import ij.io.*;
import ij.plugin.filter.*;
import ij.plugin.frame.*;
import ij.measure.ResultsTable;
import java.awt.*;
/** This plugin implements most of the commands
in the Edit/Options sub-menu. */
public class Options implements PlugIn {
public void run(String arg) {
if (arg.equals("fresh-start"))
{freshStart(); return;}
if (arg.equals("misc"))
{miscOptions(); return;}
else if (arg.equals("line"))
{lineWidth(); return;}
else if (arg.equals("io"))
{io(); return;}
else if (arg.equals("conv"))
{conversions(); return;}
else if (arg.equals("dicom"))
{dicom(); return;}
else if (arg.equals("reset"))
{reset(); return;}
}
// Miscellaneous Options
void miscOptions() {
String key = IJ.isMacintosh()?"command":"control";
GenericDialog gd = new GenericDialog("Miscellaneous Options");
gd.addStringField("Divide by zero value:", ""+FloatBlitter.divideByZeroValue, 10);
gd.addCheckbox("Use pointer cursor", Prefs.usePointerCursor);
gd.addCheckbox("Hide \"Process Stack?\" dialog", IJ.hideProcessStackDialog);
gd.addCheckbox("Require "+key+" key for shortcuts", Prefs.requireControlKey);
gd.addCheckbox("Move isolated plugins to Misc. menu", Prefs.moveToMisc);
if (!IJ.isMacOSX())
gd.addCheckbox("Run single instance listener", Prefs.runSocketListener);
gd.addCheckbox("Enhanced line tool", Prefs.enhancedLineTool);
gd.addCheckbox("Reverse CZT order of \">\" and \"<\"", Prefs.reverseNextPreviousOrder);
if (IJ.isMacOSX())
gd.addCheckbox("Don't set Mac menu bar", !Prefs.setIJMenuBar);
if (IJ.isLinux())
gd.addCheckbox("Save window locations", !Prefs.doNotSaveWindowLocations);
gd.addCheckbox("Non-blocking filter dialogs", Prefs.nonBlockingFilterDialogs);
gd.addCheckbox("Debug mode", IJ.debugMode);
//gd.addCheckbox("Modern mode", Prefs.modernMode);
gd.addHelp(IJ.URL2+"/docs/menus/edit.html#misc");
gd.showDialog();
if (gd.wasCanceled())
return;
String divValue = gd.getNextString();
if (divValue.equalsIgnoreCase("infinity") || divValue.equalsIgnoreCase("infinite"))
FloatBlitter.divideByZeroValue = Float.POSITIVE_INFINITY;
else if (divValue.equalsIgnoreCase("NaN"))
FloatBlitter.divideByZeroValue = Float.NaN;
else if (divValue.equalsIgnoreCase("max"))
FloatBlitter.divideByZeroValue = Float.MAX_VALUE;
else {
Float f;
try {f = Float.valueOf(divValue);}
catch (NumberFormatException e) {f = null;}
if (f!=null)
FloatBlitter.divideByZeroValue = f.floatValue();
}
IJ.register(FloatBlitter.class);
Prefs.usePointerCursor = gd.getNextBoolean();
IJ.hideProcessStackDialog = gd.getNextBoolean();
Prefs.requireControlKey = gd.getNextBoolean();
Prefs.moveToMisc = gd.getNextBoolean();
if (!IJ.isMacOSX())
Prefs.runSocketListener = gd.getNextBoolean();
Prefs.enhancedLineTool = gd.getNextBoolean();
Prefs.reverseNextPreviousOrder = gd.getNextBoolean();
if (IJ.isMacOSX())
Prefs.setIJMenuBar = !gd.getNextBoolean();
if (IJ.isLinux())
Prefs.doNotSaveWindowLocations = !gd.getNextBoolean();
Prefs.nonBlockingFilterDialogs = gd.getNextBoolean();
IJ.setDebugMode(gd.getNextBoolean());
//Prefs.modernMode = gd.getNextBoolean();
}
void lineWidth() {
GenericDialog gd = new GenericDialog("Default Line Width");
gd.addNumericField("Line width: ", Line.getWidth(), 0);
gd.setInsets(5,2,0);
gd.addMessage("Sets the default line selection width.\nPress 'y' (Edit>Selection>Properties)\nto change the width of the current\nline selection.");
gd.showDialog();
if (gd.wasCanceled())
return;
int width = (int)gd.getNextNumber();
Line.setWidth(width);
LineWidthAdjuster.update();
ImagePlus imp = WindowManager.getCurrentImage();
if (imp!=null && imp.isProcessor()) {
ImageProcessor ip = imp.getProcessor();
ip.setLineWidth(Line.getWidth());
Roi roi = imp.getRoi();
if (roi!=null && roi.isLine())
imp.draw();
}
}
// Input/Output options
void io() {
GenericDialog gd = new GenericDialog("I/O Options");
gd.addNumericField("JPEG quality (0-100):", FileSaver.getJpegQuality(), 0, 3, "");
gd.addNumericField("GIF and PNG transparent index:", Prefs.getTransparentIndex(), 0, 3, "");
gd.addStringField("File extension for tables (.csv, .tsv or .txt):", Prefs.defaultResultsExtension(), 4);
gd.addCheckbox("Use JFileChooser to open/save", Prefs.useJFileChooser);
if (!IJ.isMacOSX())
gd.addCheckbox("Use_file chooser to import sequences", Prefs.useFileChooser);
gd.addCheckbox("Save TIFF and raw in Intel byte order", Prefs.intelByteOrder);
gd.addCheckbox("Skip dialog when opening .raw files", Prefs.skipRawDialog);
gd.setInsets(15, 20, 0);
gd.addMessage("Results Table Options");
gd.setInsets(3, 40, 0);
gd.addCheckbox("Copy_column headers", Prefs.copyColumnHeaders);
gd.setInsets(0, 40, 0);
gd.addCheckbox("Copy_row numbers", !Prefs.noRowNumbers);
gd.setInsets(0, 40, 0);
gd.addCheckbox("Save_column headers", !Prefs.dontSaveHeaders);
gd.setInsets(0, 40, 0);
gd.addCheckbox("Save_row numbers", !Prefs.dontSaveRowNumbers);
gd.showDialog();
if (gd.wasCanceled())
return;
int quality = (int)gd.getNextNumber();
if (quality<0) quality = 0;
if (quality>100) quality = 100;
FileSaver.setJpegQuality(quality);
int transparentIndex = (int)gd.getNextNumber();
Prefs.setTransparentIndex(transparentIndex);
String extension = gd.getNextString();
if (!extension.startsWith("."))
extension = "." + extension;
Prefs.set("options.ext", extension);
boolean useJFileChooser2 = Prefs.useJFileChooser;
Prefs.useJFileChooser = gd.getNextBoolean();
if (Prefs.useJFileChooser!=useJFileChooser2)
Prefs.jFileChooserSettingChanged = true;
if (!IJ.isMacOSX())
Prefs.useFileChooser = gd.getNextBoolean();
Prefs.intelByteOrder = gd.getNextBoolean();
Prefs.skipRawDialog = gd.getNextBoolean();
Prefs.copyColumnHeaders = gd.getNextBoolean();
Prefs.noRowNumbers = !gd.getNextBoolean();
Prefs.dontSaveHeaders = !gd.getNextBoolean();
ResultsTable.getResultsTable().saveColumnHeaders(!Prefs.dontSaveHeaders);
Prefs.dontSaveRowNumbers = !gd.getNextBoolean();
return;
}
// Conversion Options
void conversions() {
double[] weights = ColorProcessor.getWeightingFactors();
boolean weighted = !(weights[0]==1d/3d && weights[1]==1d/3d && weights[2]==1d/3d);
//boolean weighted = !(Math.abs(weights[0]-1d/3d)<0.0001 && Math.abs(weights[1]-1d/3d)<0.0001 && Math.abs(weights[2]-1d/3d)<0.0001);
GenericDialog gd = new GenericDialog("Conversion Options");
gd.addCheckbox("Scale when converting", ImageConverter.getDoScaling());
gd.setInsets(0,40,0);
gd.addCheckbox("Calibrate", Prefs.calibrateConversions);
String prompt = "Weighted RGB conversions";
if (weighted)
prompt += " (" + IJ.d2s(weights[0]) + "," + IJ.d2s(weights[1]) + ","+ IJ.d2s(weights[2]) + ")";
gd.addCheckbox(prompt, weighted);
gd.addCheckbox("Full range 16-bit inversions", Prefs.fullRange16bitInversions);
gd.addHelp(IJ.URL2+"/docs/menus/edit.html#conversions");
gd.showDialog();
if (gd.wasCanceled())
return;
ImageConverter.setDoScaling(gd.getNextBoolean());
Prefs.calibrateConversions = gd.getNextBoolean();
Prefs.weightedColor = gd.getNextBoolean();
Prefs.fullRange16bitInversions = gd.getNextBoolean();
if (Prefs.calibrateConversions)
ImageConverter.setDoScaling(true);
if (!Prefs.weightedColor)
ColorProcessor.setWeightingFactors(1d/3d, 1d/3d, 1d/3d);
else if (Prefs.weightedColor && !weighted)
ColorProcessor.setWeightingFactors(0.299, 0.587, 0.114);
return;
}
// replaced by AppearanceOptions class
void appearance() {
}
// DICOM options
void dicom() {
GenericDialog gd = new GenericDialog("DICOM Options");
gd.addCheckbox("Open as 32-bit float", Prefs.openDicomsAsFloat);
gd.addCheckbox("Ignore rescale slope", Prefs.ignoreRescaleSlope);
gd.addCheckbox("Fixed Z slope and intercept", Prefs.fixedDicomScaling);
gd.addMessage("Orthogonal views");
gd.setInsets(5, 40, 0);
gd.addCheckbox("Rotate YZ", Prefs.rotateYZ);
gd.setInsets(0, 40, 0);
gd.addCheckbox("Flip XZ", Prefs.flipXZ);
gd.showDialog();
if (gd.wasCanceled())
return;
Prefs.openDicomsAsFloat = gd.getNextBoolean();
Prefs.ignoreRescaleSlope = gd.getNextBoolean();
Prefs.fixedDicomScaling = gd.getNextBoolean();
Prefs.rotateYZ = gd.getNextBoolean();
Prefs.flipXZ = gd.getNextBoolean();
}
/** Close all images, empty ROI Manager, clear the
Results table, clears the Log window and sets
"Black background" 'true'.
*/
private void freshStart() {
String options = Macro.getOptions();
boolean keepImages = false;
boolean keepResults = false;
boolean keepRois = false;
if (options!=null) {
options = options.toLowerCase();
keepImages = options.contains("images");
keepResults = options.contains("results");
keepRois = options.contains("rois");
}
if (!keepImages) {
if (!Commands.closeAll())
return;
}
if (!keepResults) {
if (!Analyzer.resetCounter())
return;
}
if (!keepRois) {
RoiManager rm = RoiManager.getInstance();
if (rm!=null)
rm.reset();
}
if (WindowManager.getWindow("Log")!=null)
IJ.log("\\Clear");
Prefs.blackBackground = true;
}
// Delete preferences file when ImageJ quits
private void reset() {
if (IJ.showMessageWithCancel("Reset Preferences", "Preferences will be reset when ImageJ restarts."))
Prefs.resetPreferences();
}
} // class Options
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