File: Scaler.java

package info (click to toggle)
imagej 1.54g-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 6,520 kB
  • sloc: java: 132,209; sh: 286; xml: 255; makefile: 6
file content (472 lines) | stat: -rw-r--r-- 15,293 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
package ij.plugin;
import ij.*;
import ij.gui.*;
import ij.process.*;
import ij.measure.*;
import ij.util.Tools;
import ij.plugin.frame.Recorder;
import java.awt.*;
import java.awt.event.*;
import java.util.*;

/** This plugin implements the Image/Scale command. */
public class Scaler implements PlugIn, TextListener, FocusListener {
	private ImagePlus imp;
	private static String xstr = "0.5";
	private static String ystr = "0.5";
	private String zstr = "1.0";
	private static int newWidth, newHeight;
	private int newDepth;
	private boolean doZScaling;
	private static boolean averageWhenDownsizing = true;
	private static boolean newWindow = true;
	private static int staticInterpolationMethod = ImageProcessor.BILINEAR;
	private int interpolationMethod = staticInterpolationMethod;
	private String[] methods = ImageProcessor.getInterpolationMethods();
	private static boolean fillWithBackground;
	private static boolean processStack = true;
	private double xscale, yscale, zscale;
	private String title = "Untitled";
	private Vector fields;
	private double bgValue;
	private boolean constainAspectRatio = true;
	private TextField xField, yField, zField, widthField, heightField, depthField;
	private Rectangle r;
	private Object fieldWithFocus;
	private int oldDepth;

	public void run(String arg) {
		imp = IJ.getImage();
		Roi roi = imp.getRoi();
		ImageProcessor ip = imp.getProcessor();
		if (roi!=null && !roi.isArea())
			ip.resetRoi();
		if (!showDialog(ip))
			return;
		doZScaling = newDepth>0 && newDepth!=oldDepth;
		if (doZScaling) {
			newWindow = true;
			processStack = true;
		}
		if ((ip.getWidth()>1 && ip.getHeight()>1) || newWindow)
			ip.setInterpolationMethod(interpolationMethod);
		else
			ip.setInterpolationMethod(ImageProcessor.NONE);
		ip.setBackgroundValue(bgValue);
		imp.startTiming();
		try {
			if (newWindow && imp.getStackSize()>1 && processStack) {
				ImagePlus imp2 = createNewStack(imp, ip, newWidth, newHeight, newDepth);
				if (imp2!=null) {
					imp2.show();
					imp2.changes = true;
				}
			} else
				scale(imp);
		}
		catch(OutOfMemoryError o) {
			IJ.outOfMemory("Scale");
		}
		IJ.showProgress(1.0);
		record(imp, newWidth, newHeight, newDepth, interpolationMethod);			
	}
	
	/** Returns a scaled copy of this image or ROI, where the
		 'options'  string can contain 'none', 'bilinear'. 'bicubic',
		'slice' and 'constrain'.
	*/
	public static ImagePlus resize(ImagePlus imp, int dstWidth, int dstHeight, int dstDepth, String options) {
		if (options==null)
			options = "";
		Scaler scaler = new Scaler();
		if (options.contains("none"))
			scaler.interpolationMethod = ImageProcessor.NONE;
		if (options.contains("bicubic"))
			scaler.interpolationMethod = ImageProcessor.BICUBIC;
		if (scaler.xscale==0) {
			scaler.xscale = (double)dstWidth/imp.getWidth();
			scaler.yscale = (double)dstHeight/imp.getHeight();
			scaler.zscale = (double)dstDepth/imp.getStackSize();
		}
		boolean processStack = imp.getStackSize()>1 && !options.contains("slice");
		//return new ImagePlus("Untitled", ip.resize(dstWidth, dstHeight, useAveraging));
		Roi roi = imp.getRoi();
		ImageProcessor ip = imp.getProcessor();
		if (roi!=null && !roi.isArea())
			ip.resetRoi();
		scaler.doZScaling = dstDepth!=1;
		if (scaler.doZScaling)
			scaler.processStack = true;
		return scaler.createNewStack(imp, ip, dstWidth, dstHeight, dstDepth);
	}

	private ImagePlus createNewStack(ImagePlus imp, ImageProcessor ip, int newWidth, int newHeight, int newDepth) {
		int nSlices = imp.getStackSize();
		int w=imp.getWidth(), h=imp.getHeight();
		ImagePlus imp2 = imp.createImagePlus();
		Rectangle r = ip.getRoi();
		boolean crop = r.width!=imp.getWidth() || r.height!=imp.getHeight();
		ImageStack stack1 = imp.getStack();
		ImageStack stack2 = new ImageStack(newWidth, newHeight);
		boolean virtualStack = stack1.isVirtual();
		double min = imp.getDisplayRangeMin();
		double max = imp.getDisplayRangeMax();
		ImageProcessor ip1, ip2;
		int method = interpolationMethod;
		if (w==1 || h==1)
			method = ImageProcessor.NONE;
		for (int i=1; i<=nSlices; i++) {
			IJ.showStatus("Scale: " + i + "/" + nSlices);
			ip1 = stack1.getProcessor(i);
			String label = stack1.getSliceLabel(i);
			if (crop) {
				ip1.setRoi(r);
				ip1 = ip1.crop();
			}
			ip1.setInterpolationMethod(method);
			ip2 = ip1.resize(newWidth, newHeight, averageWhenDownsizing);
			if (ip2!=null)
				stack2.addSlice(label, ip2);
			IJ.showProgress(i, nSlices);
		}
		imp2.setStack(title, stack2);
		if (virtualStack)
			imp2.setDisplayRange(min, max);
		Calibration cal = imp2.getCalibration();
		if (cal.scaled()) {
			cal.pixelWidth *= 1.0/xscale;
			cal.pixelHeight *= 1.0/yscale;
		}
		cal.xOrigin *= xscale;
		cal.yOrigin *= yscale;		
		Overlay overlay = imp.getOverlay();
		if (overlay!=null && !imp.getHideOverlay() && !doZScaling) {
			overlay = overlay.duplicate();
			Rectangle roi = imp.getProcessor().getRoi();
			if (roi!=null)
				overlay = overlay.crop(ip.getRoi());
			imp2.setOverlay(overlay.scale(xscale, yscale));
		}
		IJ.showProgress(1.0);
		int[] dim = imp.getDimensions();
		imp2.setDimensions(dim[2], dim[3], dim[4]);
		if (imp.isComposite()) {
			imp2 = new CompositeImage(imp2, ((CompositeImage)imp).getMode());
			((CompositeImage)imp2).copyLuts(imp);
		}
		if (imp.isHyperStack())
			imp2.setOpenAsHyperStack(true);
		if (doZScaling) {
			double oldSize = imp2.getStackSize();
			Resizer resizer = new Resizer();
			resizer.setAverageWhenDownsizing(averageWhenDownsizing);
			imp2 = resizer.zScale(imp2, newDepth, interpolationMethod);			
			cal = imp2.getCalibration();
			cal.zOrigin *= imp2.getStackSize()/oldSize;
		}
		return imp2;
	}

	private void scale(ImagePlus imp) {
		ImageProcessor ip = imp.getProcessor();
		if (newWindow) {
			Rectangle r = ip.getRoi();
			ImagePlus imp2 = imp.createImagePlus();
			imp2.setProcessor(title, ip.resize(newWidth, newHeight, averageWhenDownsizing));
			Calibration cal = imp2.getCalibration();
			if (cal.scaled()) {
				cal.pixelWidth *= 1.0/xscale;
				cal.pixelHeight *= 1.0/yscale;
			}
			cal.xOrigin *= xscale;
			cal.yOrigin *= yscale;		
			Overlay overlay = imp.getOverlay();
			if (overlay!=null && !imp.getHideOverlay()) {
				overlay = overlay.duplicate();
				int slice = imp.getCurrentSlice();
				overlay.crop(slice,slice);
				Rectangle roi = imp.getProcessor().getRoi();
				if (roi!=null)
					overlay = overlay.crop(ip.getRoi());
				overlay = overlay.scale(xscale, yscale);
				imp2.setOverlay(overlay);
			}
			imp2.show();
			imp.trimProcessor();
			imp2.trimProcessor();
			imp2.changes = true;
		} else {
			if (processStack && imp.getStackSize()>1) {
				Undo.reset();
				StackProcessor sp = new StackProcessor(imp.getStack(), ip);
				sp.scale(xscale, yscale, bgValue);
			} else {
				ip.snapshot();
				Undo.setup(Undo.FILTER, imp);
				ip.setSnapshotCopyMode(true);
				ip.scale(xscale, yscale);
				ip.setSnapshotCopyMode(false);
			}
			imp.deleteRoi();
			imp.updateAndDraw();
			imp.changes = true;
		}
	}
	
	public static void record(ImagePlus imp, int w2, int h2, int d2, int method) {
		if (!Recorder.scriptMode())
			return;
		String options = "";
		if (method==ImageProcessor.NONE)
			options = "none";
		else if (method==ImageProcessor.BICUBIC)
			options = "bicubic";
		else
			options = "bilinear";
		Recorder.recordCall("imp = imp.resize("+w2+", "+h2+(d2>0&&d2!=imp.getStackSize()?", "+d2:"")+", \""+options+"\");");
	}
	
	boolean showDialog(ImageProcessor ip) {
		String options = Macro.getOptions();
		boolean isMacro = options!=null;
		if (isMacro) {
			if (options.contains(" interpolate"))
				options = options.replaceAll(" interpolate", " interpolation=Bilinear");
			else if (!options.contains(" interpolation="))
				options = options+" interpolation=None";
			if (options.contains("width=")&&options.contains(" height=")) {
				xstr = "-";
				ystr = "-";
				if (options.contains(" depth="))
					zstr = "-";
				else
					zstr = "1.0";
			}
			Macro.setOptions(options);
			interpolationMethod = ImageProcessor.BILINEAR;
		}
		int bitDepth = imp.getBitDepth();
		int stackSize = imp.getStackSize();
		boolean isStack = stackSize>1;
		oldDepth = stackSize;
		if (isStack && !isMacro) {
			xstr = "1.0";
			ystr = "1.0";
			zstr = "1.0";
		}
		r = ip.getRoi();
		int width = newWidth;
		if (width==0) width = r.width;
		int height = (int)Math.round(((double)width*r.height/r.width));
		xscale = Tools.parseDouble(xstr, 0.0);
		yscale = Tools.parseDouble(ystr, 0.0);
		zscale = 1.0;
		if (xscale!=0.0 && yscale!=0.0) {
			width = (int)Math.round(r.width*xscale);
			height = (int)Math.round(r.height*yscale);
		} else {
			xstr = "-";
			ystr = "-";
		}
		GenericDialog gd = new GenericDialog("Scale");
		gd.addStringField("X Scale:", xstr);
		gd.addStringField("Y Scale:", ystr);
		if (isStack)
			gd.addStringField("Z Scale:", zstr);
		gd.setInsets(5, 0, 5);
		gd.addStringField("Width (pixels):", ""+width);
		gd.addStringField("Height (pixels):", ""+height);
		if (isStack) {
			String label = "Depth (images):";
			if (imp.isHyperStack()) {
				int slices = imp.getNSlices();
				int frames = imp.getNFrames();
				if (slices==1&&frames>1) {
					label = "Depth (frames):";
					oldDepth = frames;
				} else {
					label = "Depth (slices):";
					oldDepth = slices;
				}
			}
			gd.addStringField(label, ""+oldDepth);
		}
		fields = gd.getStringFields();
		if (fields!=null) {
			for (int i=0; i<fields.size(); i++) {
				((TextField)fields.elementAt(i)).addTextListener(this);
				((TextField)fields.elementAt(i)).addFocusListener(this);
			}
			xField = (TextField)fields.elementAt(0);
			yField = (TextField)fields.elementAt(1);
			if (isStack) {
				zField = (TextField)fields.elementAt(2);
				widthField = (TextField)fields.elementAt(3);
				heightField = (TextField)fields.elementAt(4);
				depthField = (TextField)fields.elementAt(5);
			} else {
				widthField = (TextField)fields.elementAt(2);
				heightField = (TextField)fields.elementAt(3);
			}
		}
		fieldWithFocus = xField;
		gd.addChoice("Interpolation:", methods, methods[interpolationMethod]);
		if (bitDepth==8 || bitDepth==24)
			gd.addCheckbox("Fill with background color", fillWithBackground);
		gd.addCheckbox("Average when downsizing", averageWhenDownsizing);
		boolean hyperstack = imp.isHyperStack() || imp.isComposite();
		if (isStack && !hyperstack)
			gd.addCheckbox("Process entire stack", processStack);
		gd.addCheckbox("Create new window", newWindow);
		title = WindowManager.getUniqueName(imp.getTitle());
		gd.setInsets(10, 0, 0);
		gd.addStringField("Title:", title, 12);
		gd.showDialog();
		if (gd.wasCanceled())
			return false;
		xstr = gd.getNextString();
		ystr = gd.getNextString();
		xscale = Tools.parseDouble(xstr, 0.0);
		yscale = Tools.parseDouble(ystr, 0.0);
		if (isStack) {
			zstr = gd.getNextString();
			zscale = Tools.parseDouble(zstr, 0.0);
		}
		String wstr = gd.getNextString();
		newWidth = (int)Math.round(Tools.parseDouble(wstr, 0));
		newHeight = (int)Math.round(Tools.parseDouble(gd.getNextString(), 0));
		if (newHeight!=0 && (wstr.equals("-") || wstr.equals("0")))
			newWidth = (int)Math.round(newHeight * (double)r.width/r.height);
		else if (newWidth!=0 && newHeight==0)
			newHeight= (int)Math.round(newWidth * (double)r.height/r.width);
		else if (newHeight!=0 && newWidth==0)
			newWidth = (int)Math.round(newHeight * (double)r.width/r.height);
		if (newWidth==0 || newHeight==0) {
			IJ.error("Scaler", "Width or height is 0");
			return false;
		}
		if (xscale>0.0 && yscale>0.0) {
			newWidth = (int)Math.round(r.width*xscale);
			newHeight = (int)Math.round(r.height*yscale);
		}
		if (isStack) {
			newDepth = (int)Math.round(Tools.parseDouble(gd.getNextString(), 0));
			if (zscale>0.0) {
				int nSlices = stackSize;
				if (imp.isHyperStack()) {
					int slices = imp.getNSlices();
					int frames = imp.getNFrames();
					if (slices==1&&frames>1)
						nSlices = frames;
					else
						nSlices = slices;
				}
				newDepth = (int)Math.round(nSlices*zscale);
			}
		}
		interpolationMethod = gd.getNextChoiceIndex();
		if (bitDepth==8 || bitDepth==24)
			fillWithBackground = gd.getNextBoolean();
		averageWhenDownsizing = gd.getNextBoolean();
		if (isStack && !hyperstack)
			processStack = gd.getNextBoolean();
		if (hyperstack)
			processStack = true;
		newWindow = gd.getNextBoolean();
		if (xscale==0.0) {
			xscale = (double)newWidth/r.width;
			yscale = (double)newHeight/r.height;
		}
		gd.setSmartRecording(true);
		title = gd.getNextString();
		if (fillWithBackground) {
			Color bgc = Toolbar.getBackgroundColor();
			if (bitDepth==8)
				bgValue = ip.getBestIndex(bgc);
			else if (bitDepth==24)
				bgValue = bgc.getRGB();
		} else
			bgValue = 0.0;
		if (!isMacro)
			staticInterpolationMethod = interpolationMethod;
		return true;
	}

	public void textValueChanged(TextEvent e) {
		if (xField==null || yField==null)
			return;
		Object source = e.getSource();
		double newXScale = xscale;
		double newYScale = yscale;
		double newZScale = zscale;
		if (source==xField && fieldWithFocus==xField) {
			String newXText = xField.getText();
			newXScale = Tools.parseDouble(newXText,0);
			if (newXScale==0) return;
			if (newXScale!=xscale) {
				int newWidth = (int)Math.round(newXScale*r.width);
				widthField.setText(""+newWidth);
				if (constainAspectRatio) {
					yField.setText(newXText);
					int newHeight = (int)Math.round(newXScale*r.height);
					heightField.setText(""+newHeight);
				}
			}
		} else if (source==yField && fieldWithFocus==yField) {
			String newYText = yField.getText();
			newYScale = Tools.parseDouble(newYText,0);
			if (newYScale==0) return;
			if (newYScale!=yscale) {
				int newHeight = (int)Math.round(newYScale*r.height);
				heightField.setText(""+newHeight);
			}
		} else if (source==zField && fieldWithFocus==zField) {
			String newZText = zField.getText();
			newZScale = Tools.parseDouble(newZText,0);
			if (newZScale==0) return;
			if (newZScale!=zscale) {
				int nSlices = imp.getStackSize();
				if (imp.isHyperStack()) {
					int slices = imp.getNSlices();
					int frames = imp.getNFrames();
					if (slices==1&&frames>1)
						nSlices = frames;
					else
						nSlices = slices;
				}
				int newDepth= (int)Math.round(newZScale*nSlices);
				depthField.setText(""+newDepth);
			}
		} else if (source==widthField && fieldWithFocus==widthField) {
			int newWidth = (int)Math.round(Tools.parseDouble(widthField.getText(), 0.0));
			if (newWidth!=0) {
				int newHeight = (int)Math.round(newWidth*(double)r.height/r.width);
				heightField.setText(""+newHeight);
				xField.setText("-");
				yField.setText("-");
				newXScale = 0.0;
				newYScale = 0.0;
			}
       } else if (source==depthField && fieldWithFocus==depthField) {
            int newDepth = (int)Math.round(Tools.parseDouble(depthField.getText(), 0.0));
            if (newDepth!=0) {
                zField.setText("-");
                newZScale = 0.0;
            }
        }
		xscale = newXScale;
		yscale = newYScale;
		zscale = newZScale;
	}

	public void focusGained(FocusEvent e) {
		fieldWithFocus = e.getSource();
		if (fieldWithFocus==widthField)
			constainAspectRatio = true;
		else if (fieldWithFocus==yField)
			constainAspectRatio = false;
	}

	public void focusLost(FocusEvent e) {}

}