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"""Test for the validation helper"""
# Authors: Guillaume Lemaitre <g.lemaitre58@gmail.com>
# Christos Aridas
# License: MIT
from collections import Counter, OrderedDict
import numpy as np
import pytest
from sklearn.cluster import KMeans
from sklearn.neighbors import NearestNeighbors
from sklearn.neighbors._base import KNeighborsMixin
from sklearn.utils._testing import assert_array_equal
from imblearn.utils import (
check_neighbors_object,
check_sampling_strategy,
check_target_type,
)
from imblearn.utils._validation import (
ArraysTransformer,
_deprecate_positional_args,
_is_neighbors_object,
)
from imblearn.utils.testing import _CustomNearestNeighbors
multiclass_target = np.array([1] * 50 + [2] * 100 + [3] * 25)
binary_target = np.array([1] * 25 + [0] * 100)
def test_check_neighbors_object():
name = "n_neighbors"
n_neighbors = 1
estimator = check_neighbors_object(name, n_neighbors)
assert issubclass(type(estimator), KNeighborsMixin)
assert estimator.n_neighbors == 1
estimator = check_neighbors_object(name, n_neighbors, 1)
assert issubclass(type(estimator), KNeighborsMixin)
assert estimator.n_neighbors == 2
estimator = NearestNeighbors(n_neighbors=n_neighbors)
estimator_cloned = check_neighbors_object(name, estimator)
assert estimator.n_neighbors == estimator_cloned.n_neighbors
estimator = _CustomNearestNeighbors()
estimator_cloned = check_neighbors_object(name, estimator)
assert isinstance(estimator_cloned, _CustomNearestNeighbors)
@pytest.mark.parametrize(
"target, output_target",
[
(np.array([0, 1, 1]), np.array([0, 1, 1])),
(np.array([0, 1, 2]), np.array([0, 1, 2])),
(np.array([[0, 1], [1, 0]]), np.array([1, 0])),
],
)
def test_check_target_type(target, output_target):
converted_target = check_target_type(target.astype(int))
assert_array_equal(converted_target, output_target.astype(int))
@pytest.mark.parametrize(
"target, output_target, is_ova",
[
(np.array([0, 1, 1]), np.array([0, 1, 1]), False),
(np.array([0, 1, 2]), np.array([0, 1, 2]), False),
(np.array([[0, 1], [1, 0]]), np.array([1, 0]), True),
],
)
def test_check_target_type_ova(target, output_target, is_ova):
converted_target, binarize_target = check_target_type(
target.astype(int), indicate_one_vs_all=True
)
assert_array_equal(converted_target, output_target.astype(int))
assert binarize_target == is_ova
def test_check_sampling_strategy_warning():
msg = "dict for cleaning methods is not supported"
with pytest.raises(ValueError, match=msg):
check_sampling_strategy({1: 0, 2: 0, 3: 0}, multiclass_target, "clean-sampling")
@pytest.mark.parametrize(
"ratio, y, type, err_msg",
[
(
0.5,
binary_target,
"clean-sampling",
"'clean-sampling' methods do let the user specify the sampling ratio", # noqa
),
(
0.1,
np.array([0] * 10 + [1] * 20),
"over-sampling",
"remove samples from the minority class while trying to generate new", # noqa
),
(
0.1,
np.array([0] * 10 + [1] * 20),
"under-sampling",
"generate new sample in the majority class while trying to remove",
),
],
)
def test_check_sampling_strategy_float_error(ratio, y, type, err_msg):
with pytest.raises(ValueError, match=err_msg):
check_sampling_strategy(ratio, y, type)
def test_check_sampling_strategy_error():
with pytest.raises(ValueError, match="'sampling_type' should be one of"):
check_sampling_strategy("auto", np.array([1, 2, 3]), "rnd")
error_regex = "The target 'y' needs to have more than 1 class."
with pytest.raises(ValueError, match=error_regex):
check_sampling_strategy("auto", np.ones((10,)), "over-sampling")
error_regex = "When 'sampling_strategy' is a string, it needs to be one of"
with pytest.raises(ValueError, match=error_regex):
check_sampling_strategy("rnd", np.array([1, 2, 3]), "over-sampling")
@pytest.mark.parametrize(
"sampling_strategy, sampling_type, err_msg",
[
("majority", "over-sampling", "over-sampler"),
("minority", "under-sampling", "under-sampler"),
],
)
def test_check_sampling_strategy_error_wrong_string(
sampling_strategy, sampling_type, err_msg
):
with pytest.raises(
ValueError,
match=("'{}' cannot be used with {}".format(sampling_strategy, err_msg)),
):
check_sampling_strategy(sampling_strategy, np.array([1, 2, 3]), sampling_type)
@pytest.mark.parametrize(
"sampling_strategy, sampling_method",
[
({10: 10}, "under-sampling"),
({10: 10}, "over-sampling"),
([10], "clean-sampling"),
],
)
def test_sampling_strategy_class_target_unknown(sampling_strategy, sampling_method):
y = np.array([1] * 50 + [2] * 100 + [3] * 25)
with pytest.raises(ValueError, match="are not present in the data."):
check_sampling_strategy(sampling_strategy, y, sampling_method)
def test_sampling_strategy_dict_error():
y = np.array([1] * 50 + [2] * 100 + [3] * 25)
sampling_strategy = {1: -100, 2: 50, 3: 25}
with pytest.raises(ValueError, match="in a class cannot be negative."):
check_sampling_strategy(sampling_strategy, y, "under-sampling")
sampling_strategy = {1: 45, 2: 100, 3: 70}
error_regex = (
"With over-sampling methods, the number of samples in a"
" class should be greater or equal to the original number"
" of samples. Originally, there is 50 samples and 45"
" samples are asked."
)
with pytest.raises(ValueError, match=error_regex):
check_sampling_strategy(sampling_strategy, y, "over-sampling")
error_regex = (
"With under-sampling methods, the number of samples in a"
" class should be less or equal to the original number of"
" samples. Originally, there is 25 samples and 70 samples"
" are asked."
)
with pytest.raises(ValueError, match=error_regex):
check_sampling_strategy(sampling_strategy, y, "under-sampling")
@pytest.mark.parametrize("sampling_strategy", [-10, 10])
def test_sampling_strategy_float_error_not_in_range(sampling_strategy):
y = np.array([1] * 50 + [2] * 100)
with pytest.raises(ValueError, match="it should be in the range"):
check_sampling_strategy(sampling_strategy, y, "under-sampling")
def test_sampling_strategy_float_error_not_binary():
y = np.array([1] * 50 + [2] * 100 + [3] * 25)
with pytest.raises(ValueError, match="the type of target is binary"):
sampling_strategy = 0.5
check_sampling_strategy(sampling_strategy, y, "under-sampling")
@pytest.mark.parametrize("sampling_method", ["over-sampling", "under-sampling"])
def test_sampling_strategy_list_error_not_clean_sampling(sampling_method):
y = np.array([1] * 50 + [2] * 100 + [3] * 25)
with pytest.raises(ValueError, match="cannot be a list for samplers"):
sampling_strategy = [1, 2, 3]
check_sampling_strategy(sampling_strategy, y, sampling_method)
def _sampling_strategy_func(y):
# this function could create an equal number of samples
target_stats = Counter(y)
n_samples = max(target_stats.values())
return {key: int(n_samples) for key in target_stats.keys()}
@pytest.mark.parametrize(
"sampling_strategy, sampling_type, expected_sampling_strategy, target",
[
("auto", "under-sampling", {1: 25, 2: 25}, multiclass_target),
("auto", "clean-sampling", {1: 25, 2: 25}, multiclass_target),
("auto", "over-sampling", {1: 50, 3: 75}, multiclass_target),
("all", "over-sampling", {1: 50, 2: 0, 3: 75}, multiclass_target),
("all", "under-sampling", {1: 25, 2: 25, 3: 25}, multiclass_target),
("all", "clean-sampling", {1: 25, 2: 25, 3: 25}, multiclass_target),
("majority", "under-sampling", {2: 25}, multiclass_target),
("majority", "clean-sampling", {2: 25}, multiclass_target),
("minority", "over-sampling", {3: 75}, multiclass_target),
("not minority", "over-sampling", {1: 50, 2: 0}, multiclass_target),
("not minority", "under-sampling", {1: 25, 2: 25}, multiclass_target),
("not minority", "clean-sampling", {1: 25, 2: 25}, multiclass_target),
("not majority", "over-sampling", {1: 50, 3: 75}, multiclass_target),
("not majority", "under-sampling", {1: 25, 3: 25}, multiclass_target),
("not majority", "clean-sampling", {1: 25, 3: 25}, multiclass_target),
(
{1: 70, 2: 100, 3: 70},
"over-sampling",
{1: 20, 2: 0, 3: 45},
multiclass_target,
),
(
{1: 30, 2: 45, 3: 25},
"under-sampling",
{1: 30, 2: 45, 3: 25},
multiclass_target,
),
([1], "clean-sampling", {1: 25}, multiclass_target),
(
_sampling_strategy_func,
"over-sampling",
{1: 50, 2: 0, 3: 75},
multiclass_target,
),
(0.5, "over-sampling", {1: 25}, binary_target),
(0.5, "under-sampling", {0: 50}, binary_target),
],
)
def test_check_sampling_strategy(
sampling_strategy, sampling_type, expected_sampling_strategy, target
):
sampling_strategy_ = check_sampling_strategy(
sampling_strategy, target, sampling_type
)
assert sampling_strategy_ == expected_sampling_strategy
def test_sampling_strategy_callable_args():
y = np.array([1] * 50 + [2] * 100 + [3] * 25)
multiplier = {1: 1.5, 2: 1, 3: 3}
def sampling_strategy_func(y, multiplier):
"""samples such that each class will be affected by the multiplier."""
target_stats = Counter(y)
return {
key: int(values * multiplier[key]) for key, values in target_stats.items()
}
sampling_strategy_ = check_sampling_strategy(
sampling_strategy_func, y, "over-sampling", multiplier=multiplier
)
assert sampling_strategy_ == {1: 25, 2: 0, 3: 50}
@pytest.mark.parametrize(
"sampling_strategy, sampling_type, expected_result",
[
(
{3: 25, 1: 25, 2: 25},
"under-sampling",
OrderedDict({1: 25, 2: 25, 3: 25}),
),
(
{3: 100, 1: 100, 2: 100},
"over-sampling",
OrderedDict({1: 50, 2: 0, 3: 75}),
),
],
)
def test_sampling_strategy_check_order(
sampling_strategy, sampling_type, expected_result
):
# We pass on purpose a non sorted dictionary and check that the resulting
# dictionary is sorted. Refer to issue #428.
y = np.array([1] * 50 + [2] * 100 + [3] * 25)
sampling_strategy_ = check_sampling_strategy(sampling_strategy, y, sampling_type)
assert sampling_strategy_ == expected_result
def test_arrays_transformer_plain_list():
X = np.array([[0, 0], [1, 1]])
y = np.array([[0, 0], [1, 1]])
arrays_transformer = ArraysTransformer(X.tolist(), y.tolist())
X_res, y_res = arrays_transformer.transform(X, y)
assert isinstance(X_res, list)
assert isinstance(y_res, list)
def test_arrays_transformer_numpy():
X = np.array([[0, 0], [1, 1]])
y = np.array([[0, 0], [1, 1]])
arrays_transformer = ArraysTransformer(X, y)
X_res, y_res = arrays_transformer.transform(X, y)
assert isinstance(X_res, np.ndarray)
assert isinstance(y_res, np.ndarray)
def test_arrays_transformer_pandas():
pd = pytest.importorskip("pandas")
X = np.array([[0, 0], [1, 1]])
y = np.array([0, 1])
X_df = pd.DataFrame(X, columns=["a", "b"])
X_df = X_df.astype(int)
y_df = pd.DataFrame(y, columns=["target"])
y_df = y_df.astype(int)
y_s = pd.Series(y, name="target", dtype=int)
# DataFrame and DataFrame case
arrays_transformer = ArraysTransformer(X_df, y_df)
X_res, y_res = arrays_transformer.transform(X, y)
assert isinstance(X_res, pd.DataFrame)
assert_array_equal(X_res.columns, X_df.columns)
assert_array_equal(X_res.dtypes, X_df.dtypes)
assert isinstance(y_res, pd.DataFrame)
assert_array_equal(y_res.columns, y_df.columns)
assert_array_equal(y_res.dtypes, y_df.dtypes)
# DataFrames and Series case
arrays_transformer = ArraysTransformer(X_df, y_s)
_, y_res = arrays_transformer.transform(X, y)
assert isinstance(y_res, pd.Series)
assert_array_equal(y_res.name, y_s.name)
assert_array_equal(y_res.dtype, y_s.dtype)
def test_deprecate_positional_args_warns_for_function():
@_deprecate_positional_args
def f1(a, b, *, c=1, d=1):
pass
with pytest.warns(FutureWarning, match=r"Pass c=3 as keyword args"):
f1(1, 2, 3)
with pytest.warns(FutureWarning, match=r"Pass c=3, d=4 as keyword args"):
f1(1, 2, 3, 4)
@_deprecate_positional_args
def f2(a=1, *, b=1, c=1, d=1):
pass
with pytest.warns(FutureWarning, match=r"Pass b=2 as keyword args"):
f2(1, 2)
# The * is place before a keyword only argument without a default value
@_deprecate_positional_args
def f3(a, *, b, c=1, d=1):
pass
with pytest.warns(FutureWarning, match=r"Pass b=2 as keyword args"):
f3(1, 2)
@pytest.mark.parametrize(
"estimator, is_neighbor_estimator", [(NearestNeighbors(), True), (KMeans(), False)]
)
def test_is_neighbors_object(estimator, is_neighbor_estimator):
assert _is_neighbors_object(estimator) == is_neighbor_estimator
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