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#ifndef __ZRAN_H__
#define __ZRAN_H__
/*
* The zran module is an adaptation of the zran example, written by Mark
* Alder, which ships with the zlib source code. It allows the creation
* of an index into a compressed file, which is used to improve the speed
* of random seek/read access to the uncompressed data.
*/
#include <stdlib.h>
#include <stdint.h>
#define PY_SSIZE_T_CLEAN
#include <Python.h>
struct _zran_index;
struct _zran_point;
typedef struct _zran_index zran_index_t;
typedef struct _zran_point zran_point_t;
/*
* These values may be passed in as flags to the zran_init function.
* They are specified as bit-masks, rather than bit locations.
*/
enum {
ZRAN_AUTO_BUILD = 1,
ZRAN_SKIP_CRC_CHECK = 2,
};
/*
* Struct representing the index. None of the fields in this struct
* should ever need to be accessed or modified directly.
*/
struct _zran_index {
/*
* Handle to the compressed file.
*/
FILE *fd;
/*
* Handle to the compressed file object.
*/
PyObject *f;
/*
* Size of the compressed file. This
* is calculated in zran_init.
*/
uint64_t compressed_size;
/*
* Size of the uncompressed data. This is
* only updated when it becomes known.
*/
uint64_t uncompressed_size;
/*
* Spacing size in bytes, relative to the
* uncompressed data stream, between adjacent
* index points.
*/
uint32_t spacing;
/*
* Number of bytes of uncompressed data to store
* for each index point. This must be a minimum
* of 32768 bytes.
*/
uint32_t window_size;
/*
* Base2 logarithm of the window size - it
* is needed to initialise zlib inflation.
*/
uint32_t log_window_size;
/*
* Size, in bytes, of buffer used to store
* compressed data read from disk.
*/
uint32_t readbuf_size;
/*
* Number of index points that have been created.
*/
uint32_t npoints;
/*
* Number of index points that can be stored -
* i.e. the amount allocated to the "list" field.
*/
uint32_t size;
/*
* List of index points.
*/
zran_point_t *list;
/*
* Most recently requested seek/read
* location into the uncompressed data
* stream - this is used to keep track
* of where the calling code thinks it
* is in the (uncompressed) file.
*/
uint64_t uncmp_seek_offset;
/*
* Flags passed to zran_init
*/
uint16_t flags;
/*
* All of the fields after this point are used
* by the internal _zran_inflate function.
*/
/*
* Reference to a file input
* buffer of size readbuf_size.
*/
uint8_t *readbuf;
/*
* An offset into readbuf.
*/
uint32_t readbuf_offset;
/*
* The current end of the readbuf contents.
*/
uint32_t readbuf_end;
/*
* Current offsets into the uncompressed and
* compressed data streams.
*/
uint64_t inflate_cmp_offset;
uint64_t inflate_uncmp_offset;
/*
* Uncompressed offset at the point that the
* last GZIP stream ended. This is updated as
* more data is read and uncompressed, and
* used to determine whether the CRC/size
* check for the current stream has already
* been performed.
*/
uint64_t last_stream_ended;
/*
* CRC-32 checksum and size (number of
* bytes, modulo 2^32) of the uncompressed
* data in the current gzip stream, not
* used if ZRAN_SKIP_CRC_CHECK is active.
* The CRC and size are incrementally
* calculated as data is read in. When the
* end of a gzip stream is reached, the
* calculated CRC and size are compared
* against the CRC and size in the gzip
* footer, and an error is returned if
* they don't match.
*/
uint32_t stream_crc32;
uint32_t stream_size;
uint8_t validating;
};
/*
* Struct representing a single seek point in the index.
*/
struct _zran_point {
/*
* Location of this point in the compressed data
* stream. This is the location of the first full
* byte of compressed data - if the compressed
* and uncompressed locations are not byte-aligned,
* the bits field below specifies the bit offset.
*/
uint64_t cmp_offset;
/*
* Corresponding location of this point
* in the uncompressed data stream.
*/
uint64_t uncmp_offset;
/*
* If this point is not byte-aligned, this specifies
* the number of bits, in the compressed stream,
* back from cmp_offset, that the uncompressed data
* starts.
*/
uint8_t bits;
/*
* Chunk of uncompressed data preceding this point.
* This is required to initialise decompression from
* this point onward.
*/
uint8_t *data;
};
/*
* Initialise a zran_index_t struct for use with the given file.
*
* Passing in 0 for the spacing, window_size and readbuf_size arguments
* will result in the following values being used:
*
* spacing: 1048576
* window_size: 32768
* readbuf_size: 16384
*
* The read buffer must be at least the maximum expected size of a GZIP
* header. GZIP headers have a minimum size of 10 bytes, but there is no upper
* bound on their size, so using a very small read buffer would be unwise. In
* the case of concatenated GZIP streams, the read buffer must be at least big
* enough to accommodate a GZIP footer of one stream, padding bytes in between
* two streams, and the GZIP header of the next stream.
*
* The flags argument is a bit mask used to control the following options:
*
* ZRAN_AUTO_BUILD: Build the index automatically on demand.
*
* ZRAN_SKIP_CRC_CHECK: Do not perform a CRC32 and file size check
* when the end of a GZIP stream is reached.
* This flag is automatically set when an index
* is imported from file using zran_import_index.
*/
int zran_init(
zran_index_t *index, /* The index */
FILE *fd, /* Open handle to the compressed file */
PyObject *f, /* Open handle to the compressed file object */
uint32_t spacing, /* Distance in bytes between
index seek points */
uint32_t window_size, /* Number of uncompressed bytes
to store with each point */
uint32_t readbuf_size, /* Number of bytes to read at a time */
uint16_t flags /* Flags controlling index behaviour */
);
/*
* Frees the memory use by the given index. The zran_index_t struct
* itself is not freed.
*/
void zran_free(
zran_index_t *index /* The index */
);
/*
* Return codes for zran_build_index.
*/
enum {
ZRAN_BUILD_INDEX_OK = 0,
ZRAN_BUILD_INDEX_FAIL = -1,
ZRAN_BUILD_INDEX_CRC_ERROR = -2,
};
/*
* (Re-)Builds the index to cover the given range, which must be
* specified relative to the compressed data stream. Pass in 0
* for both offsets to re-build the full index.
*
* Returns ZRAN_BUILD_INDEX_OK on success, ZRAN_BUILD_INDEX_CRC_ERROR
* if a CRC error is detected in a GZIP stream, or ZRAN_BUILD_INDEX_FAIL
* if some other type of error occurs.
*/
int zran_build_index(
zran_index_t *index, /* The index */
uint64_t from, /* Build the index from this point */
uint64_t until /* Build the index to this point */
);
/* Return codes for zran_seek. */
enum {
ZRAN_SEEK_CRC_ERROR = -2,
ZRAN_SEEK_FAIL = -1,
ZRAN_SEEK_OK = 0,
ZRAN_SEEK_NOT_COVERED = 1,
ZRAN_SEEK_EOF = 2,
ZRAN_SEEK_INDEX_NOT_BUILT = 3
};
/*
* Seek to the specified offset in the uncompressed data stream.
* If the index does not currently cover the offset, and it was
* created with the ZRAN_AUTO_BUILD flag, the index is expanded
* to cover the offset.
*
* Seeking from the end of the uncompressed stream (using SEEK_END)
* is only possible if the index fully covers the file.
*
* Returns:
* - ZRAN_SEEK_OK for success.
*
* - ZRAN_SEEK_INDEX_NOT_BUILT if SEEK_END is used, and the index
* does not fully cover the file.
*
* - ZRAN_SEEK_NOT_COVERED to indicate that the index does not
* cover the requested offset (will never happen if
* ZRAN_AUTO_BUILD is active).
*
* - ZRAN_SEEK_EOF to indicate that the requested offset
* is past the end of the uncompressed stream.
*
* - ZRAN_SEEK_CRC_ERROR to indicate that the CRC or file size
* stored in the footer of a GZIP stream does not match the
* data.
*
* - ZRAN_SEEK_FAIL to indicate failure of some sort.
*/
int zran_seek(
zran_index_t *index, /* The index */
int64_t offset, /* Uncompressed offset to seek to */
uint8_t whence, /* SEEK_SET, SEEK_CUR, or SEEK_END */
zran_point_t **point /* Optional place to store
corresponding zran_point_t */
);
/*
* Returns the current seek location in the uncompressed data stream
* (just returns zran_index_t.uncmp_seek_offset).
*/
uint64_t zran_tell(
zran_index_t *index /* The index */
);
/* Return codes for zran_read. */
enum {
ZRAN_READ_NOT_COVERED = -1,
ZRAN_READ_EOF = -2,
ZRAN_READ_FAIL = -3,
ZRAN_READ_CRC_ERROR = -4
};
/*
* Read len bytes from the current location in the uncompressed
* data stream, storing them in buf. If the index was created with
* the ZRAN_AUTO_BUILD flag, it is expanded as needed.
*
* Returns:
* - Number of bytes read for success, or one of the following codes,
* all of which are negative.
*
* - ZRAN_READ_NOT_COVERED to indicate that the index does not
* cover the requested region (will never happen if
* ZRAN_AUTO_BUILD is active).
*
* - ZRAN_READ_EOF to indicate that the read could not be completed
* because the current uncompressed seek point is at EOF.
*
* - ZRAN_SEEK_CRC_ERROR to indicate that the CRC or file size
* stored in the footer of a GZIP stream does not match the
* data.
*
* - ZRAN_READ_FAIL to indicate that the read failed for some reason.
*/
int64_t zran_read(
zran_index_t *index, /* The index */
void *buf, /* Buffer to store len bytes */
uint64_t len /* Number of bytes to read */
);
/*
* Identifier and version number for index files created by zran_export_index,
* defined in zran.c.
*/
extern const char ZRAN_INDEX_FILE_ID[];
extern const uint8_t ZRAN_INDEX_FILE_VERSION;
/* Return codes for zran_export_index. */
enum {
ZRAN_EXPORT_OK = 0,
ZRAN_EXPORT_WRITE_ERROR = -1
};
/*
* Export current index data to given file. This exported file later can be
* used to rebuild index without needing to going through the file again.
*
* See zran_import_index for importing.
*
* A zran index file is a binary file which has the following header
* structure. All fields are assumed to be stored with little-endian
* ordering:
*
* | Offset | Length | Description |
* | 0 | 5 | File header (ascii, GZIDX) |
* | 5 | 1 | Version (uint8, currently 1) |
* | 6 | 1 | Reserved (uint8, currently must be 0) |
* | 7 | 8 | Compressed file size (uint64) |
* | 15 | 8 | Uncompressed file size (uint64) |
* | 23 | 4 | Index point spacing (uint32) |
* | 27 | 4 | Index window size W (uint32) |
* | 31 | 4 | Number of index points (uint32) |
*
* The header is followed by the offsets for each index point:
*
* | Offset | Length | Description |
* | 0 | 8 | Compressed offset for point 0 (uint64) |
* | 8 | 8 | Uncompressed offset for point 0 (uint64) |
* | 16 | 1 | Bit offset for point 0 (uint8) |
* | 17 | 1 | Data flag - 1 if point has window data, |
* | | | 0 otherwise (uint8, added in file format |
* | | | version 1) |
* | ... | ... | ... |
* | N*18 | 8 | Compressed offset for point N (uint64) |
* | ... | ... | ... |
*
* Finally the window data for all index points that have data is
* concatenated (W represents the index window size):
*
* | Offset | Length | Description |
* | 0 | W | Window data for first index point with data |
* | ... | ... | ... |
* | N*W | W | Window data for Nth index point with data |
*
* Returns:
* - ZRAN_EXPORT_OK for success.
*
* - ZRAN_EXPORT_WRITE_ERROR to indicate an error from writing to underlying
* file.
*/
int zran_export_index(
zran_index_t *index, /* The index */
FILE *fd, /* Open handle to export file */
PyObject *f /* Open handle to export file object */
);
/* Return codes for zran_import_index. */
enum {
ZRAN_IMPORT_OK = 0,
ZRAN_IMPORT_FAIL = -1,
ZRAN_IMPORT_EOF = -2,
ZRAN_IMPORT_READ_ERROR = -3,
ZRAN_IMPORT_INCONSISTENT = -4,
ZRAN_IMPORT_MEMORY_ERROR = -5,
ZRAN_IMPORT_UNKNOWN_FORMAT = -6,
ZRAN_IMPORT_UNSUPPORTED_VERSION = -7
};
/*
* Import current index from the given file. index must have been initialized
* by zran_init function before calling this function, as it is not supported
* importing into an uninitialised zran_index_t struct. Existing index will be
* overwritten including spacing and window_size values, whereas values of
* readbuf_size and flags will be kept.
*
* Updating an index file is not supported currently. To update an index file,
* first import it, create new checkpoints, and then export it again.
*
* CRC validation of uncompressed data from an imported index is not currently
* supported - this function will enable the ZRAN_SKIP_CRC_CHECK flag on the
* given zran_index_t struct.
*
* See zran_export_index for exporting.
*
* Returns:
* - ZRAN_IMPORT_OK for success.
*
* - ZRAN_IMPORT_FAIL general errors.
*
* - ZRAN_IMPORT_EOF to indicate unexpected end-of-file.
*
* - ZRAN_IMPORT_READ_ERROR to indicate error while reading file.
*
* - ZRAN_IMPORT_OVERFLOW to indicate overflow while reading compressed and
* uncompressed size attributes. This shouldn't be a problem for x64
* processors.
*
* - ZRAN_IMPORT_INCONSISTENT to indicate compressed size, or uncompressed
* size if known, of the index file is inconsistent with the loaded
* compressed file.
*
* - ZRAN_IMPORT_MEMORY_ERROR to indicate failure to allocate memory for new
* index. This typically result from out-of-memory.
*
* - ZRAN_IMPORT_UNKNOWN_FORMAT to indicate given file is of unknown format.
*
* - ZRAN_IMPORT_UNSUPPORTED_VERSION to indicate that the file has a version
* which is too new for this version of indexed_gzip to parse.
*/
int zran_import_index(
zran_index_t *index, /* The index */
FILE *fd, /* Open handle to import file */
PyObject *f /* Open handle to import file object */
);
#endif /* __ZRAN_H__ */
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