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using System;
using System.Collections.Generic;
using System.Text;
using System.Runtime.InteropServices;
namespace indigo
{
public unsafe interface BingoCoreLib
{
String bingoGetVersion ();
String bingoGetError ();
String bingoGetWarning ();
int bingoSetContext (int id);
int bingoSetConfigInt (
[MarshalAs(UnmanagedType.LPStr)] string name, int value);
int bingoGetConfigInt (
[MarshalAs(UnmanagedType.LPStr)] string name, out int value);
int bingoSetConfigBin (
[MarshalAs(UnmanagedType.LPStr)] string name,
[MarshalAs(UnmanagedType.LPArray)] byte[] value, int len);
int bingoGetConfigBin (
[MarshalAs(UnmanagedType.LPStr)] string name, out IntPtr value, out int len);
int bingoClearTautomerRules ();
int bingoAddTautomerRule (int n,
[MarshalAs(UnmanagedType.LPStr)] string beg,
[MarshalAs(UnmanagedType.LPStr)] string end);
int bingoTautomerRulesReady ();
int mangoSetupMatch (
[MarshalAs(UnmanagedType.LPStr)] string search_type,
[MarshalAs(UnmanagedType.LPStr)] string query,
[MarshalAs(UnmanagedType.LPStr)] string options);
int ringoSetupMatch (
[MarshalAs(UnmanagedType.LPStr)] string search_type,
[MarshalAs(UnmanagedType.LPStr)] string query,
[MarshalAs(UnmanagedType.LPStr)] string options);
int mangoMatchTarget (
[MarshalAs(UnmanagedType.LPArray)] byte[] target,
int target_buf_len);
int mangoMatchTargetBinary (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_cmf, int target_cmf_len,
[MarshalAs(UnmanagedType.LPArray)] byte[] target_xyz, int target_xyz_len);
int ringoMatchTarget (
[MarshalAs(UnmanagedType.LPArray)] byte[] target,
int target_buf_len);
int ringoMatchTargetBinary (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_cmf, int target_cmf_len);
int bingoSDFImportOpen (
[MarshalAs(UnmanagedType.LPStr)] string filename);
int bingoSDFImportClose ();
int bingoSDFImportEOF ();
sbyte* bingoSDFImportGetNext ();
sbyte* bingoSDFImportGetProperty (
[MarshalAs(UnmanagedType.LPStr)] string param_name);
int bingoRDFImportOpen (
[MarshalAs(UnmanagedType.LPStr)] string filename);
int bingoRDFImportClose ();
int bingoRDFImportEOF ();
sbyte* bingoRDFImportGetNext ();
sbyte* bingoRDFImportGetProperty (
[MarshalAs(UnmanagedType.LPStr)] string param_name);
/* Indexing */
int bingoIndexBegin ();
int bingoIndexEnd ();
int bingoIndexMarkTermintate ();
int bingoSetIndexRecordData (int id, byte[] data, int data_size);
int bingoIndexProcess (
[MarshalAs(UnmanagedType.I1)] bool is_reaction,
BingoCore.GetNextRecordHandler get_next_record,
BingoCore.ProcessResultHandler process_result,
BingoCore.ProcessErrorHandler process_error, IntPtr context);
int mangoIndexReadPreparedMolecule (
out int id,
out IntPtr cmf_buf, out int cmf_buf_len,
out IntPtr xyz_buf, out int xyz_buf_len,
out IntPtr gross_str,
out IntPtr counter_elements_str,
out IntPtr fingerprint_buf, out int fingerprint_buf_len,
out IntPtr fingerprint_sim_str,
out float mass, out int sim_fp_bits_count);
int ringoIndexReadPreparedReaction (
out int id,
out IntPtr crf_buf, out int crf_buf_len,
out IntPtr fingerprint_buf, out int fingerprint_buf_len);
int bingoIndexSetSkipFP ([MarshalAs(UnmanagedType.I1)] bool skip);
int mangoGetHash (
[MarshalAs(UnmanagedType.I1)] bool for_index,
int index, out int count, out int hash);
int mangoGetQueryFingerprint (out IntPtr query_fp, out int query_fp_len);
int ringoGetQueryFingerprint (out IntPtr query_fp, out int query_fp_len);
int mangoGetAtomCount (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len);
int mangoGetBondCount (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len);
sbyte* mangoSMILES (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len, int canonical);
sbyte* ringoRSMILES (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len);
sbyte* mangoMolfile (
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len);
sbyte* mangoCML (
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len);
IntPtr mangoICM (
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len,
[MarshalAs(UnmanagedType.I1)] bool save_xyz, out int out_len);
IntPtr ringoICR (
[MarshalAs(UnmanagedType.LPArray)] byte[] reaction, int reaction_len,
[MarshalAs(UnmanagedType.I1)] bool save_xyz, out int out_len);
sbyte* ringoRxnfile (
[MarshalAs(UnmanagedType.LPArray)] byte[] reaction, int reaction_len);
sbyte* ringoRCML (
[MarshalAs(UnmanagedType.LPArray)] byte[] reaction, int reaction_len);
IntPtr mangoFingerprint(
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len,
[MarshalAs(UnmanagedType.LPStr)] string options, out int out_len);
IntPtr ringoFingerprint(
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len,
[MarshalAs(UnmanagedType.LPStr)] string options, out int out_len);
sbyte* mangoInChI(
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len,
[MarshalAs(UnmanagedType.LPStr)] string options, out int out_len);
sbyte* mangoInChIKey([MarshalAs(UnmanagedType.LPStr)] string inchi);
sbyte* mangoGetCountedElementName(int index);
int mangoNeedCoords ();
[return: MarshalAs(UnmanagedType.I1)]
bool mangoExactNeedComponentMatching ();
sbyte* mangoTauGetQueryGross ();
int mangoSimilarityGetBitMinMaxBoundsArray (
int count,
[MarshalAs(UnmanagedType.LPArray)] int[] target_ones,
out IntPtr min_bound,
out IntPtr max_bound);
int mangoSimilaritySetMinMaxBounds (
float min_bound, float max_bound);
int mangoSimilarityGetScore (out Single score);
int mangoSetHightlightingMode (int enable);
int mangoLoadTargetBinaryXyz (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_xyz, int target_xyz_len);
sbyte* mangoGetHightlightedMolecule ();
int ringoSetHightlightingMode (int enable);
sbyte* ringoGetHightlightedReaction ();
sbyte* ringoAAM (
[MarshalAs(UnmanagedType.LPArray)] byte[] reaction, int reaction_len,
[MarshalAs(UnmanagedType.LPStr)] string options);
sbyte* ringoCheckReaction (
[MarshalAs(UnmanagedType.LPArray)] byte[] reaction, int reaction_len);
sbyte* mangoCheckMolecule (
[MarshalAs(UnmanagedType.LPArray)] byte[] molecule, int molecule_len);
sbyte* mangoGross (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len);
int mangoMass (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len,
[MarshalAs(UnmanagedType.LPStr)] string type, out float mass);
sbyte* mangoGrossGetConditions ();
int ringoGetHash ([MarshalAs(UnmanagedType.I1)] bool for_index, out int hash);
/* Profiling */
void bingoProfilingReset (
[MarshalAs(UnmanagedType.I1)] bool reset_whole_session);
sbyte* bingoProfilingGetStatistics ([MarshalAs(UnmanagedType.I1)] bool for_session);
float bingoProfilingGetTime (
[MarshalAs(UnmanagedType.LPStr)] string counter_name,
[MarshalAs(UnmanagedType.I1)] bool whole_session);
long bingoProfilingGetValue (
[MarshalAs(UnmanagedType.LPStr)] string counter_name,
[MarshalAs(UnmanagedType.I1)] bool whole_session);
long bingoProfilingGetCount (
[MarshalAs(UnmanagedType.LPStr)] string counter_name,
[MarshalAs(UnmanagedType.I1)] bool whole_session);
UInt64 bingoProfNanoClock ();
void bingoProfIncTimer (
[MarshalAs(UnmanagedType.LPStr)] string target_buf, UInt64 dt);
void bingoProfIncCounter (
[MarshalAs(UnmanagedType.LPStr)] string target_buf, int value);
sbyte* bingoGetNameCore (
[MarshalAs(UnmanagedType.LPArray)] byte[] target_buf, int target_buf_len);
int bingoSMILESImportOpen ( [MarshalAs(UnmanagedType.LPStr)] string file_name);
int bingoSMILESImportClose ();
int bingoSMILESImportEOF ();
String bingoSMILESImportGetNext ();
/* Test functions */
int bingoCheckMemoryAllocate (int mem);
int bingoCheckMemoryFree ();
/* Session managing */
[return: MarshalAs(UnmanagedType.U8)]
ulong bingoAllocateSessionID ();
void bingoReleaseSessionID ([MarshalAs(UnmanagedType.U8)] ulong id);
void bingoSetSessionID ([MarshalAs(UnmanagedType.U8)] ulong id);
[return: MarshalAs(UnmanagedType.U8)]
ulong bingoGetSessionID ();
}
}
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