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#!/usr/bin/python
# Script to convert HMMER/Infernal/Easel test suite output into JUnit XML for Teamcity integration
from lxml import etree
import sys
if len(sys.argv) != 3:
print"Usage: parse_test_results.py <infile> <outfile>"
quit()
infile_name = sys.argv[1]
outfile_name = sys.argv[2]
infile = open(infile_name, "r") #open the input file
#root of the XML tree is a "testsuites" entry
root = etree.Element("testsuites")
suite_passed = 0
suite_failed = 0
total_passed = 0
total_failed = 0
suite = "NONE"
#iterate over the lines in the file
for line in infile:
tokens = line.split()
# print tokens
#need to test length of tokens because there are some empty lines in the test output that
#crash the script if you ask for their first element
if len(tokens) > 0 and tokens[0] == "Running":
#This is the start of a new test suite
if suite != "NONE":
#need to close out the previous suite before we start a new one
suite.set("errors", "0") #format expects these values even though we don't use them
suite.set("skipped", "0") #format expectes these values even though we don't use them
suite.set("tests", str(suite_passed+suite_failed))
suite.set("failures", str(suite_failed))
suite.set("time", "0") # Just fake this since we don't track test time
suite.set("timestamp", "2013-05-24T10:23:58")
suite_passed = 0
suite_failed = 0
suitename = tokens[1].lower()
suite = etree.SubElement(root, "testsuite")
suite.set("name", suitename)
if len(tokens) > 0 and tokens[0] == "exercise":
#this is a new test result
if(suite == "NONE"):
print"Error: attempting to add test but didn't find a suite first"
quit()
test = etree.SubElement(suite, "testcase");
testname = tokens[-3][:-1]
if testname[0] == '[':
testname = testname[1:]
test.set("classname", suite.get("name"))
test.set("name", testname)
test.set("time", "0")
if tokens[-1] == "FAILED":
suite_failed += 1;
total_failed += 1;
#test failed, add appropriate fields to record
failed = etree.SubElement(test, "failure")
#extract what information we can from the output
if tokens[6] == "[crash!]":
failed.set("message", "crash")
failed.text ="crash"
else:
suite_passed += 1
total_passed += 1
#lines with other first tokens aren't relevant to us
if suite != "NONE":
#need to close out the previous suite before we start a new one
suite.set("errors", "0") #format expects these values even though we don't use them
suite.set("skipped", "0") #format expectes these values even though we don't use them
suite.set("tests", str(suite_passed+suite_failed))
suite.set("failures", str(suite_failed))
suite.set("time", "0") # Just fake this since we don't track test time
suite.set("timestamp", "2013-05-24T10:23:58")
# Done with processing, so write the XML to a file for import into Teamcity
xml = etree.ElementTree(root)
xml.write(outfile_name, pretty_print=True)
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