1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
|
INFERNAL1/a [1.1.4 | Dec 2020]
NAME tRNA5
STATES 230
NODES 61
CLEN 72
W 89
ALPH RNA
RF no
CONS yes
MAP yes
DATE Mon Nov 30 12:13:44 2020
COM [1] cmbuild tRNA5.cm tutorial/tRNA5.sto
COM [2] cmcalibrate tRNA5.cm
PBEGIN 0.05
PEND 0.05
WBETA 1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA 1.52588e-05
N3OMEGA 1.52588e-05
ELSELF -0.08926734
NSEQ 5
EFFN 3.725586
CKSUM 3535941971
NULL 0.000 0.000 0.000 0.000
EFP7GF -5.5308 0.72956
ECMLC 0.85463 -4.02610 2.43529 1600000 300199 0.003997
ECMGC 0.39488 -17.39027 -4.06373 1600000 77177 0.005183
ECMLI 0.73029 -3.71128 3.57687 1600000 245858 0.004881
ECMGI 0.43914 -12.19064 -0.87377 1600000 57594 0.006945
CM
[ ROOT 0 ] - - - - - -
S 0 -1 0 1 4 0 1 89 108 -7.419 -8.664 -0.055 -5.118
IL 1 1 2 1 4 3 28 90 110 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000
IR 2 2 3 2 3 4 30 90 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000
[ MATR 1 ] - 74 - a - -
MR 3 2 3 5 5 4 32 89 108 -7.593 -0.028 -7.408 -7.620 -8.512 0.470 -1.194 0.301 -0.080
D 4 2 3 5 5 1 24 87 107 -5.352 -0.707 -2.978 -4.409 -2.404
IR 5 5 3 5 5 3 28 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 2 ] 1 73 g c - -
MP 6 5 3 10 6 5 32 88 107 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.833 -2.996 -3.797 0.617 -3.622 -4.453 0.851 -3.921 -3.871 2.840 -4.277 -0.712 1.867 -3.844 -1.179 -2.705
ML 7 5 3 10 6 3 26 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 8 5 3 10 6 2 25 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 9 5 3 10 6 0 21 84 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 10 10 5 10 6 3 27 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 11 11 6 11 5 3 27 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 3 ] 2 72 C G - -
MP 12 11 6 16 6 5 31 86 105 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.098 -3.807 -3.998 0.020 -3.009 -4.647 3.104 -3.661 -3.978 1.526 -4.392 -1.586 0.835 -4.248 -0.625 -2.808
ML 13 11 6 16 6 2 25 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 14 11 6 16 6 2 25 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 15 11 6 16 6 0 21 82 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 16 16 5 16 6 3 27 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 17 17 6 17 5 3 27 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 4 ] 3 71 c g - -
MP 18 17 6 22 6 5 29 84 103 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.140 -2.882 -3.221 0.732 -2.759 -4.022 2.237 -3.230 -3.241 1.672 -3.746 0.534 1.623 -3.340 -0.445 -2.157
ML 19 17 6 22 6 2 25 82 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 20 17 6 22 6 2 24 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 21 17 6 22 6 0 20 80 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 22 22 5 22 6 3 26 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 23 23 6 23 5 3 26 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 5 ] 4 70 g c - -
MP 24 23 6 28 6 5 28 82 101 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.476 -2.740 -3.483 0.859 -3.431 -4.224 1.963 -3.681 -3.592 2.504 -4.026 0.677 0.629 -3.528 -1.012 -2.418
ML 25 23 6 28 6 2 24 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 26 23 6 28 6 2 24 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 27 23 6 28 6 0 20 78 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 28 28 5 28 6 3 25 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 29 29 6 29 5 3 25 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 6 ] 5 69 g c - -
MP 30 29 6 34 6 5 26 80 99 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -2.569 0.044 -2.688 1.822 -2.760 -3.488 0.994 -3.023 -2.792 2.059 -3.296 -0.372 0.754 -2.776 0.545 -1.822
ML 31 29 6 34 6 2 23 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 32 29 6 34 6 2 23 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 33 29 6 34 6 0 19 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 34 34 5 34 6 2 24 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 35 35 6 35 5 3 24 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 7 ] 6 68 c g - -
MP 36 35 6 40 6 5 24 78 97 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.249 -3.160 -3.320 0.517 -2.656 -4.116 2.087 -3.214 -3.309 1.472 -3.822 -1.143 2.084 -3.482 0.796 -2.233
ML 37 35 6 40 6 2 22 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 38 35 6 40 6 2 21 77 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 39 35 6 40 6 0 19 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 40 40 5 40 6 2 23 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 41 41 6 41 5 2 23 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 8 ] 7 67 A U - -
MP 42 41 6 46 4 4 22 76 95 -7.543 -7.750 -0.035 -6.164 -3.772 -3.134 -3.804 3.014 -3.548 -4.778 0.725 -3.795 -3.754 0.821 -4.252 -0.783 1.437 -4.136 -1.242 -2.692
ML 43 41 6 46 4 1 21 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
MR 44 41 6 46 4 1 20 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
D 45 41 6 46 4 0 19 74 94 -4.568 -4.250 -2.265 -0.520
IL 46 46 5 46 4 2 22 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 47 47 6 47 3 2 21 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 9 ] 8 - U - - -
ML 48 47 6 50 3 2 20 73 93 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
D 49 47 6 50 3 0 18 72 92 -6.174 -1.687 -0.566
IL 50 50 3 50 3 2 20 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 10 ] 9 - A - - -
ML 51 50 3 53 2 1 19 72 92 -9.006 -0.003 1.043 -1.963 0.389 -1.420
D 52 50 3 53 2 0 18 71 91 -8.445 -0.004
IL 53 53 3 53 2 1 19 73 93 -1.823 -0.479 0.000 0.000 0.000 0.000
[ BIF 11 ] - - - - - -
B 54 53 3 124 55 0 18 71 91
[ BEGR 42 ] - - - - - -
S 55 54 1 56 3 0 0 36 55 -8.524 -0.014 -7.178
IL 56 56 2 56 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 43 ] 45 - A - - -
ML 57 56 2 59 3 1 1 36 55 -8.524 -0.014 -7.178 1.377 -1.607 -1.675 -0.394
D 58 56 2 59 3 0 0 35 54 -6.174 -1.687 -0.566
IL 59 59 3 59 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 44 ] 46 - G - - -
ML 60 59 3 62 3 1 1 35 54 -8.524 -0.014 -7.178 -2.700 -4.060 1.885 -3.430
D 61 59 3 62 3 0 0 34 53 -6.174 -1.687 -0.566
IL 62 62 3 62 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 45 ] 47 - g - - -
ML 63 62 3 65 3 1 1 34 52 -8.524 -0.479 -1.837 0.581 -2.025 0.923 -1.467
D 64 62 3 65 3 0 0 33 52 -6.174 -1.687 -0.566
IL 65 65 3 65 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 46 ] 48 - U - - -
ML 66 65 3 68 3 1 1 33 51 -8.064 -0.019 -6.718 -1.672 -1.636 -2.414 1.668
D 67 65 3 68 3 0 0 31 50 -8.413 -0.228 -2.804
IL 68 68 3 68 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 47 ] 49 - C - - -
ML 69 68 3 71 5 1 1 31 50 -7.593 -0.028 -7.408 -7.620 -8.512 -1.580 1.337 -2.468 -0.061
D 70 68 3 71 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508
IL 71 71 3 71 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 48 ] 50 66 C G - -
MP 72 71 3 76 6 2 2 30 49 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.064 -3.836 -3.975 1.365 -2.984 -4.641 3.138 -3.636 -3.946 0.195 -4.368 -1.642 0.814 -4.254 -0.622 -2.802
ML 73 71 3 76 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 74 71 3 76 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 75 71 3 76 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 76 76 5 76 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 77 77 6 77 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 49 ] 51 65 g c - -
MP 78 77 6 82 6 2 2 28 47 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.269 -3.003 -3.316 0.606 -2.823 -4.080 1.488 -3.317 -3.360 2.119 -3.845 -0.942 1.991 -3.443 0.797 -2.268
ML 79 77 6 82 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 80 77 6 82 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 81 77 6 82 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 82 82 5 82 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 83 83 6 83 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 50 ] 52 64 g c - -
MP 84 83 6 88 6 2 2 26 45 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.571 -3.003 -3.541 0.632 -3.162 -4.230 1.795 -3.600 -3.654 2.620 -4.076 -0.817 0.769 -3.617 0.692 -2.475
ML 85 83 6 88 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 86 83 6 88 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 87 83 6 88 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 88 88 5 88 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 89 89 6 89 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 51 ] 53 63 g c - -
MP 90 89 6 94 6 2 2 24 43 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.678 -2.654 -3.622 1.503 -3.999 -4.304 0.538 -4.010 -3.824 2.935 -4.199 -0.343 1.033 -3.596 -1.457 -2.573
ML 91 89 6 94 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 92 89 6 94 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 93 89 6 94 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 94 94 5 94 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 95 95 6 95 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 52 ] 54 62 G C - -
MP 96 95 6 100 4 2 2 22 41 -7.543 -7.750 -0.035 -6.164 -5.814 -3.622 -6.104 -0.561 -6.715 -5.090 -1.814 -6.360 -4.961 3.816 -5.237 -1.382 -2.178 -5.150 -3.925 -4.967
ML 97 95 6 100 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
MR 98 95 6 100 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
D 99 95 6 100 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
IL 100 100 5 100 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 101 101 6 101 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 53 ] 55 - U - - -
ML 102 101 6 104 3 1 1 20 38 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
D 103 101 6 104 3 0 0 19 38 -6.174 -1.687 -0.566
IL 104 104 3 104 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 54 ] 56 - U - - -
ML 105 104 3 107 3 1 1 18 37 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
D 106 104 3 107 3 0 0 18 37 -6.174 -1.687 -0.566
IL 107 107 3 107 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 55 ] 57 - C - - -
ML 108 107 3 110 3 1 1 17 36 -8.524 -0.014 -7.178 -3.081 1.849 -3.880 -2.250
D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566
IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 56 ] 58 - G - - -
ML 111 110 3 113 3 1 1 16 34 -8.524 -0.014 -7.178 -0.200 -2.382 1.410 -1.837
D 112 110 3 113 3 0 0 16 34 -6.174 -1.687 -0.566
IL 113 113 3 113 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 57 ] 59 - A - - -
ML 114 113 3 116 3 1 1 14 33 -8.524 -0.014 -7.178 1.878 -3.490 -3.019 -3.147
D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566
IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 58 ] 60 - U - - -
ML 117 116 3 119 3 1 1 13 31 -8.524 -0.014 -7.178 -1.470 -0.412 -2.237 1.420
D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566
IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 59 ] 61 - U - - -
ML 120 119 3 122 2 1 1 1 1 * 0.000 -1.238 0.320 -2.046 1.060
D 121 119 3 122 2 0 0 0 0 * 0.000
IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 60 ] - - - - - -
E 123 122 3 -1 0 0 0 0 0
[ BEGL 12 ] - - - - - -
S 124 54 1 125 1 0 3 49 68 0.000
[ BIF 13 ] - - - - - -
B 125 124 1 126 173 0 3 49 68
[ BEGL 14 ] - - - - - -
S 126 125 1 127 4 0 0 30 48 -0.035 -7.164 -6.572 -7.212
[ MATP 15 ] 10 26 G C - -
MP 127 126 1 131 6 2 2 30 48 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.769 -3.152 -4.806 0.250 -5.798 -4.949 -0.982 -5.232 -4.515 3.516 -4.858 0.892 -1.247 -4.551 -3.006 -3.684
ML 128 126 1 131 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 129 126 1 131 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 130 126 1 131 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 131 131 5 131 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 132 132 6 132 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 16 ] 11 25 c g - -
MP 133 132 6 137 6 2 2 28 46 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -4.381 -4.332 -4.173 -0.462 -2.935 -4.679 2.955 -3.697 -4.172 -0.279 -4.525 -2.247 2.364 -4.479 -0.580 -2.998
ML 134 132 6 137 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 135 132 6 137 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 136 132 6 137 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 137 137 5 137 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 138 138 6 138 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 17 ] 12 24 g c - -
MP 139 138 6 143 6 2 2 26 44 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.840 -2.992 -3.803 0.619 -3.640 -4.455 0.835 -3.933 -3.879 2.855 -4.283 -0.707 1.845 -3.846 -1.194 -2.711
ML 140 138 6 143 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 141 138 6 143 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 142 138 6 143 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 143 143 5 143 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 144 144 6 144 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 18 ] 13 23 c g - -
MP 145 144 6 149 4 2 2 24 42 -7.543 -7.750 -0.035 -6.164 -3.455 -3.491 -3.468 0.042 -2.693 -4.153 2.809 -3.319 -3.484 0.166 -3.946 -1.654 0.946 -3.680 1.160 0.630
ML 146 144 6 149 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
MR 147 144 6 149 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
D 148 144 6 149 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520
IL 149 149 5 149 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 150 150 6 150 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 19 ] 14 - A - - -
ML 151 150 6 153 3 1 1 20 39 -8.524 -0.014 -7.178 1.878 -3.490 -3.019 -3.147
D 152 150 6 153 3 0 0 20 39 -6.174 -1.687 -0.566
IL 153 153 3 153 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 20 ] 15 - g - - -
ML 154 153 3 156 3 1 1 19 38 -8.524 -0.014 -7.178 0.581 -2.025 0.923 -1.467
D 155 153 3 156 3 0 0 19 37 -6.174 -1.687 -0.566
IL 156 156 3 156 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 21 ] 16 - U - - -
ML 157 156 3 159 3 1 1 18 36 -1.905 -0.462 -7.178 -1.470 -0.412 -2.237 1.420
D 158 156 3 159 3 0 0 16 35 -6.174 -1.687 -0.566
IL 159 159 3 159 3 1 1 18 36 -2.371 -0.364 -5.071 0.000 0.000 0.000 0.000
[ MATL 22 ] 18 - G - - -
ML 160 159 3 162 3 1 1 16 34 -8.524 -0.014 -7.178 -2.700 -4.060 1.885 -3.430
D 161 159 3 162 3 0 0 16 35 -6.174 -1.687 -0.566
IL 162 162 3 162 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 23 ] 19 - G - - -
ML 163 162 3 165 3 1 1 14 33 -8.524 -0.014 -7.178 -2.700 -4.060 1.885 -3.430
D 164 162 3 165 3 0 0 15 33 -6.174 -1.687 -0.566
IL 165 165 3 165 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 24 ] 20 - u - - -
ML 166 165 3 168 3 1 1 11 23 -1.859 -0.479 -7.178 -0.667 -0.329 -0.618 0.943
D 167 165 3 168 3 0 0 9 20 -6.174 -1.687 -0.566
IL 168 168 3 168 3 1 1 11 22 -2.393 -0.358 -5.094 0.000 0.000 0.000 0.000
[ MATL 25 ] 22 - A - - -
ML 169 168 3 171 2 1 1 1 1 * 0.000 1.878 -3.490 -3.019 -3.147
D 170 168 3 171 2 0 0 0 0 * 0.000
IL 171 171 3 171 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 26 ] - - - - - -
E 172 171 3 -1 0 0 0 0 0
[ BEGR 27 ] - - - - - -
S 173 125 1 174 3 0 0 32 50 -8.524 -0.014 -7.178
IL 174 174 2 174 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 28 ] 27 - g - - -
ML 175 174 2 177 5 1 1 31 50 -7.593 -0.028 -7.408 -7.620 -8.512 0.518 -2.045 0.977 -1.487
D 176 174 2 177 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508
IL 177 177 3 177 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000
[ MATP 29 ] 28 44 c g - -
MP 178 177 3 182 6 2 2 30 49 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -2.994 -2.782 -3.093 0.748 -2.686 -3.888 2.201 -3.144 -3.117 1.706 -3.625 0.470 1.173 -3.211 0.638 -2.071
ML 179 177 3 182 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 180 177 3 182 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 181 177 3 182 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 182 182 5 182 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 183 183 6 183 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 30 ] 29 43 c g - -
MP 184 183 6 188 6 2 2 28 47 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.661 -3.463 -3.664 0.354 -2.819 -4.407 2.682 -3.427 -3.640 1.511 -4.116 -1.307 1.762 -3.845 -0.432 -2.490
ML 185 183 6 188 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 186 183 6 188 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 187 183 6 188 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 188 188 5 188 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 189 189 6 189 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 31 ] 30 42 a u - -
MP 190 189 6 194 6 2 2 26 45 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.311 -3.146 -3.360 2.223 -2.773 -4.128 2.024 -3.303 -3.378 0.846 -3.869 -1.126 1.691 -3.528 -0.492 -2.313
ML 191 189 6 194 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 192 189 6 194 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 193 189 6 194 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 194 194 5 194 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 195 195 6 195 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 32 ] 31 41 g c - -
MP 196 195 6 200 6 2 2 24 43 -9.364 -9.303 -0.018 -8.080 -8.360 -8.755 -3.455 -2.736 -3.469 0.856 -3.403 -4.215 1.978 -3.659 -3.571 2.453 -4.008 0.790 0.644 -3.520 -0.993 -2.404
ML 197 195 6 200 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094
MR 198 195 6 200 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094
D 199 195 6 200 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319
IL 200 200 5 200 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000
IR 201 201 6 201 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000
[ MATP 33 ] 32 40 c g - -
MP 202 201 6 206 4 2 2 22 41 -7.543 -7.750 -0.035 -6.164 -3.331 -2.890 -3.379 1.842 -3.038 -4.188 2.207 -3.435 -3.424 1.865 -3.910 -0.718 0.912 -3.502 -0.696 -2.309
ML 203 201 6 206 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094
MR 204 201 6 206 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094
D 205 201 6 206 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520
IL 206 206 5 206 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000
IR 207 207 6 207 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 34 ] 33 - c - - -
ML 208 207 6 210 3 1 1 20 38 -8.524 -0.014 -7.178 -1.254 0.886 -2.110 0.586
D 209 207 6 210 3 0 0 19 38 -6.174 -1.687 -0.566
IL 210 210 3 210 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 35 ] 34 - U - - -
ML 211 210 3 213 3 1 1 18 37 -8.524 -0.014 -7.178 -2.549 -2.369 -3.320 1.822
D 212 210 3 213 3 0 0 18 37 -6.174 -1.687 -0.566
IL 213 213 3 213 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 36 ] 35 - g - - -
ML 214 213 3 216 3 1 1 17 36 -8.524 -0.014 -7.178 -0.765 -1.430 0.842 0.319
D 215 213 3 216 3 0 0 17 35 -6.174 -1.687 -0.566
IL 216 216 3 216 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 37 ] 36 - u - - -
ML 217 216 3 219 3 1 1 16 34 -8.524 -0.014 -7.178 0.034 -0.321 -0.383 0.494
D 218 216 3 219 3 0 0 16 34 -6.174 -1.687 -0.566
IL 219 219 3 219 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 38 ] 37 - c - - -
ML 220 219 3 222 3 1 1 14 33 -8.524 -0.014 -7.178 0.410 0.777 -1.645 -0.649
D 221 219 3 222 3 0 0 15 33 -6.174 -1.687 -0.566
IL 222 222 3 222 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 39 ] 38 - A - - -
ML 223 222 3 225 3 1 1 13 31 -8.524 -0.014 -7.178 1.041 -1.963 0.393 -1.420
D 224 222 3 225 3 0 0 13 32 -6.174 -1.687 -0.566
IL 225 225 3 225 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000
[ MATL 40 ] 39 - a - - -
ML 226 225 3 228 2 1 1 1 1 * 0.000 0.960 0.161 -1.522 -0.766
D 227 225 3 228 2 0 0 0 0 * 0.000
IL 228 228 3 228 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000
[ END 41 ] - - - - - -
E 229 228 3 -1 0 0 0 0 0
//
HMMER3/f [3.3.2 | Nov 2020]
NAME tRNA5
LENG 72
MAXL 152
ALPH RNA
RF no
MM no
CONS yes
CS yes
MAP yes
DATE Mon Nov 30 12:13:44 2020
COM [1] cmbuild tRNA5.cm tutorial/tRNA5.sto
NSEQ 5
EFFN 4.575195
CKSUM 3535941971
STATS LOCAL MSV -8.3699 0.72956
STATS LOCAL VITERBI -9.7413 0.72956
STATS LOCAL FORWARD -2.8399 0.72956
HMM A C G U
m->m m->i m->d i->m i->i d->m d->d
COMPO 1.54570 1.43799 1.21652 1.37367
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 *
1 2.27079 2.21490 0.67135 1.28523 1 G - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
2 2.72063 0.53685 1.59090 1.92527 2 C - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
3 2.13298 1.12976 1.20203 1.35549 3 c - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
4 2.06490 1.33379 0.73838 2.02645 4 g - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
5 1.12215 2.01561 1.13090 1.52126 5 a - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
6 2.27611 1.26293 1.56266 0.90407 6 u - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
7 0.55662 2.34993 2.06100 1.58887 7 A - - (
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
8 3.41131 3.24840 3.95063 0.09549 8 U - - ,
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
9 0.62965 2.93028 1.08685 2.56970 9 A - - ,
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
10 2.58535 3.48756 0.15226 3.34410 10 G - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
11 3.04402 0.66655 2.81788 0.96983 11 C - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
12 2.27143 2.22663 0.66084 1.30001 12 G - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
13 2.70762 0.72821 2.52158 0.99371 13 c - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
14 0.06447 4.06946 3.72356 3.85378 14 A - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
15 0.96622 2.96307 0.70760 2.59033 15 g - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
16 2.58165 1.68977 3.11702 0.36312 16 U - - _
1.38629 1.38629 1.38629 1.38629
0.36115 1.24052 4.27667 0.09342 2.41702 1.09861 0.40547
17 3.50204 4.46790 0.06149 4.01568 18 G - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
18 3.50204 4.46790 0.06149 4.01568 19 G - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
19 1.93148 1.62028 1.81899 0.70313 20 u - - _
1.38629 1.38629 1.38629 1.38629
0.37416 1.20984 4.27667 0.09067 2.44554 1.09861 0.40547
20 0.06447 4.06946 3.72356 3.85378 22 A - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
21 2.10259 2.68961 0.46909 1.69075 23 G - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
22 1.38968 0.71752 2.05553 2.00352 24 c - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
23 1.05977 2.98080 0.61336 2.79384 25 G - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
24 3.52944 0.29921 3.29112 1.64992 26 C - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
25 1.01315 2.97570 0.66965 2.60334 27 G - - ,
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
26 2.10994 1.15294 1.18589 1.35645 28 c - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
27 2.42886 0.83807 1.56751 1.30655 29 c - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
28 1.09733 1.30020 2.02817 1.33870 30 a - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
29 2.06821 1.32188 0.74716 2.01556 31 g - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
30 1.36637 1.16031 1.31163 1.81892 32 c - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
31 2.40781 0.72675 3.01934 0.97372 33 c - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
32 3.41131 3.24840 3.95063 0.09549 34 U - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
33 2.03168 2.50154 0.74780 1.15989 35 g - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
34 1.37287 1.61240 1.64688 1.03687 36 u - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
35 1.09105 0.79438 2.66650 1.94644 37 c - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
36 0.63121 2.93013 1.08447 2.56938 38 A - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
37 0.68220 1.24329 2.57206 2.04265 39 A - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
38 2.05140 1.42363 1.07022 1.24592 40 g - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
39 2.25421 1.00362 1.23507 1.43684 41 c - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
40 1.49214 2.19526 1.18556 1.02665 42 u - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
41 1.46403 1.66350 0.76083 2.18974 43 g - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
42 1.84535 1.51215 0.89011 1.55598 44 g - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
43 0.39234 2.62595 2.68326 1.69384 45 A - - ,
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
44 3.50204 4.46790 0.06149 4.01568 46 G - - ,
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
45 0.96622 2.96307 0.70760 2.59033 47 g - - ,
1.38629 1.38629 1.38629 1.38629
0.37416 4.27667 1.20984 1.46634 0.26236 1.09861 0.40547
46 2.76761 2.70502 3.29089 0.18260 48 U - - ,
1.38629 1.38629 1.38629 1.38629
0.03959 3.94209 3.94209 1.46634 0.26236 0.08905 2.46273
47 2.65759 0.41476 3.29124 1.46027 49 C - - ,
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
48 1.72987 0.51403 2.49789 1.94942 50 C - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
49 2.23468 1.71045 1.13944 0.93601 51 u - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
50 2.24351 1.47097 0.81116 1.51472 52 g - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
51 1.61421 2.40152 0.60242 1.81470 53 G - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
52 3.13624 4.03650 0.08313 3.98115 54 G - - <
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
53 3.41131 3.24840 3.95063 0.09549 55 U - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
54 3.41131 3.24840 3.95063 0.09549 56 U - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
55 3.81775 0.07857 4.34279 3.20425 57 C - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
56 1.55263 3.20711 0.37162 2.84358 58 G - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
57 0.06447 4.06946 3.72356 3.85378 59 A - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
58 2.58165 1.68977 3.11702 0.36312 60 U - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
59 2.39899 1.13679 2.96960 0.62172 61 U - - _
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
60 4.11657 0.10126 3.89068 2.82058 62 C - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
61 1.95958 0.67296 2.21851 1.42663 63 C - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
62 2.17846 0.87096 1.10240 1.99391 64 c - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
63 1.27508 1.21677 1.24101 2.00015 65 c - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
64 2.19664 2.68339 0.47037 1.63106 66 G - - >
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
65 1.69093 2.30923 2.17599 0.50614 67 U - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
66 1.21860 1.66933 0.94796 2.05218 68 g - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
67 2.09561 1.05113 1.49085 1.19640 69 c - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
68 2.26553 0.96675 1.24692 1.47613 70 c - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
69 1.52614 1.55592 1.02458 1.54796 71 g - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
70 2.18053 1.66714 0.48803 2.47223 72 G - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
71 1.37504 0.72646 2.04633 2.00734 73 c - - )
1.38629 1.38629 1.38629 1.38629
0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547
72 1.05252 2.28790 1.14995 1.45752 74 a - - :
1.38629 1.38629 1.38629 1.38629
0.01418 4.26268 * 1.46634 0.26236 0.00000 *
//
|
