1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
|
/*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: itkBioGenome.cxx
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#include "itkBioGenome.h"
namespace itk {
namespace bio {
/**
* Constructor
*/
Genome
::Genome()
{
}
/**
* Destructor
*/
Genome
::~Genome()
{
}
/**
* Copy from another genome
*/
void
Genome
::Copy( const Genome & genome )
{
m_Map.clear();
typedef Genome::MapType::const_iterator IteratorType;
IteratorType begin = genome.m_Map.begin();
IteratorType end = genome.m_Map.end();
IteratorType gene = begin;
while( gene != end )
{
m_Map[ gene->first ] = gene->second;
++gene;
}
}
/**
* Inset a gene in the genome
*/
void
Genome
::InsertGene( const GeneIdType & geneId )
{
// operator[] will create the geneId if
// it doesn't exist yet
// By default the gene is inhibited
m_Map[ geneId ] = 0.0;
}
/**
* Knockout a gene in the genome
*/
void
Genome
::KnockOutGene( const GeneIdType & geneId )
{
m_Map.erase( geneId );
}
/**
* Return the level of expression of a particular gene
*/
double
Genome
::GetExpressionLevel( const GeneIdType & geneId )
{
return m_Map[ geneId ];
}
/**
* Set the level of expression of a particular gene
*/
void
Genome
::SetExpressionLevel( const GeneIdType & geneId, double level )
{
m_Map[ geneId ] = level;
}
} // end namespace bio
} // end namespace itk
|
