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/*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: $RCSfile: itkBioGene.cxx,v $
Language: C++
Date: $Date: 2003-09-10 14:28:28 $
Version: $Revision: 1.9 $
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#include "itkBioGene.h"
#include <algorithm>
namespace itk {
namespace bio {
/**
* Constructor
*/
Gene
::Gene()
{
m_Name = "Unknown";
}
/**
* Destructor
*/
Gene
::~Gene()
{
}
/**
* Copy from another genome
*/
void
Gene
::Copy( const Gene & gene )
{
m_Name = gene.m_Name;
m_ControlDomains.clear();
m_ControlDomains.insert( m_ControlDomains.begin(),
gene.m_ControlDomains.begin(),
gene.m_ControlDomains.end() );
m_ProteinDomains.clear();
ProteinDomainsType::const_iterator proteinDomain = gene.m_ProteinDomains.begin();
ProteinDomainsType::const_iterator last = gene.m_ProteinDomains.end();
while( proteinDomain != last )
{
m_ProteinDomains[ (*proteinDomain).first ] = (*proteinDomain).second;
++proteinDomain;
}
}
/**
* Set the name of the gene
*/
void
Gene
::SetName( const NameType & name )
{
m_Name = name;
}
/**
* Set the name of the gene
*/
void
Gene
::SetName( const char * name )
{
m_Name = name;
}
/**
* Get the name of the gene
*/
const char *
Gene
::GetName() const
{
return m_Name.c_str();
}
/**
* Add a protein domain
*/
void
Gene
::AddProteinDomain( const DomainType & domain, AffinityType affinity )
{
m_ProteinDomains[ domain ] = affinity;
}
/**
* Add a protein domain
*/
void
Gene
::AddGeneControlDomain( const DomainType & domain, bool type )
{
ControlDomainType controlDomain;
controlDomain.domain = domain;
controlDomain.type = type;
m_ControlDomains.push_back( controlDomain );
}
} // end namespace bio
} // end namespace itk
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