1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318
|
/*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: $RCSfile: itkVectorResampleImageFilter.txx,v $
Language: C++
Date: $Date: 2007-04-25 22:10:16 $
Version: $Revision: 1.17 $
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef _itkVectorResampleImageFilter_txx
#define _itkVectorResampleImageFilter_txx
#include "itkVectorResampleImageFilter.h"
#include "itkObjectFactory.h"
#include "itkIdentityTransform.h"
#include "itkVectorLinearInterpolateImageFunction.h"
#include "itkProgressReporter.h"
#include "itkImageRegionIteratorWithIndex.h"
namespace itk
{
/**
* Initialize new instance
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
VectorResampleImageFilter<TInputImage, TOutputImage, TInterpolatorPrecisionType>
::VectorResampleImageFilter()
{
m_OutputSpacing.Fill(1.0);
m_OutputOrigin.Fill(0.0);
m_OutputDirection.SetIdentity();
m_Size.Fill( 0 );
m_OutputStartIndex.Fill( 0 );
m_Transform = IdentityTransform<TInterpolatorPrecisionType, ImageDimension>::New();
m_Interpolator = VectorLinearInterpolateImageFunction<InputImageType, TInterpolatorPrecisionType>::New();
m_DefaultPixelValue.Fill(0);
// Borland does not produce reliable results for nulti processors
#ifdef __BORLANDC__
this->SetNumberOfThreads(1);
#endif
}
/**
* Print out a description of self
*
* \todo Add details about this class
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage, TOutputImage,TInterpolatorPrecisionType>
::PrintSelf(std::ostream& os, Indent indent) const
{
Superclass::PrintSelf(os,indent);
os << indent << "DefaultPixelValue: "
<< static_cast<typename NumericTraits<PixelType>::PrintType>(m_DefaultPixelValue)
<< std::endl;
os << indent << "Size: " << m_Size << std::endl;
os << indent << "OutputStartIndex: " << m_OutputStartIndex << std::endl;
os << indent << "OutputSpacing: " << m_OutputSpacing << std::endl;
os << indent << "OutputOrigin: " << m_OutputOrigin << std::endl;
os << indent << "OutputDirection: " << m_OutputDirection << std::endl;
os << indent << "Transform: " << m_Transform.GetPointer() << std::endl;
os << indent << "Interpolator: " << m_Interpolator.GetPointer() << std::endl;
return;
}
/**
* Set the output image spacing.
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::SetOutputSpacing(const double* spacing)
{
SpacingType s(spacing);
this->SetOutputSpacing( s );
}
/**
* Set the output image origin.
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::SetOutputOrigin(const double* origin)
{
PointType p(origin);
this->SetOutputOrigin( p );
}
/**
* Set up state of filter before multi-threading.
* InterpolatorType::SetInputImage is not thread-safe and hence
* has to be set up before ThreadedGenerateData
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::BeforeThreadedGenerateData()
{
if( !m_Interpolator )
{
itkExceptionMacro(<< "Interpolator not set");
}
// Connect input image to interpolator
m_Interpolator->SetInputImage( this->GetInput() );
}
/**
* Set up state of filter after multi-threading.
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::AfterThreadedGenerateData()
{
// Disconnect input image from the interpolator
m_Interpolator->SetInputImage( NULL );
}
/**
* ThreadedGenerateData
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::ThreadedGenerateData(
const OutputImageRegionType& outputRegionForThread,
int threadId)
{
itkDebugMacro(<<"Actually executing");
// Get the output pointers
OutputImagePointer outputPtr = this->GetOutput();
// Get ths input pointers
InputImageConstPointer inputPtr=this->GetInput();
// Create an iterator that will walk the output region for this thread.
typedef ImageRegionIteratorWithIndex<TOutputImage> OutputIterator;
OutputIterator outIt(outputPtr, outputRegionForThread);
// Define a few indices that will be used to translate from an input pixel
// to an output pixel
PointType outputPoint; // Coordinates of current output pixel
PointType inputPoint; // Coordinates of current input pixel
typedef ContinuousIndex<TInterpolatorPrecisionType, ImageDimension> ContinuousIndexType;
ContinuousIndexType inputIndex;
const unsigned int numberOfComponents = PixelType::GetNumberOfComponents();
// Support for progress methods/callbacks
ProgressReporter progress(this, threadId, outputRegionForThread.GetNumberOfPixels());
typedef typename InterpolatorType::OutputType OutputType;
// Walk the output region
outIt.GoToBegin();
while ( !outIt.IsAtEnd() )
{
// Determine the index of the current output pixel
outputPtr->TransformIndexToPhysicalPoint( outIt.GetIndex(), outputPoint );
// Compute corresponding input pixel position
inputPoint = m_Transform->TransformPoint(outputPoint);
inputPtr->TransformPhysicalPointToContinuousIndex(inputPoint, inputIndex);
// Evaluate input at right position and copy to the output
if( m_Interpolator->IsInsideBuffer(inputIndex) )
{
PixelType pixval;
const OutputType value
= m_Interpolator->EvaluateAtContinuousIndex( inputIndex );
for( unsigned int i=0; i< numberOfComponents; i++ )
{
pixval[i] = static_cast<PixelComponentType>( value[i] );
}
outIt.Set( pixval );
}
else
{
outIt.Set(m_DefaultPixelValue); // default background value
}
progress.CompletedPixel();
++outIt;
}
return;
}
/**
* Inform pipeline of necessary input image region
*
* Determining the actual input region is non-trivial, especially
* when we cannot assume anything about the transform being used.
* So we do the easy thing and request the entire input image.
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::GenerateInputRequestedRegion()
{
// call the superclass's implementation of this method
Superclass::GenerateInputRequestedRegion();
if ( !this->GetInput() )
{
return;
}
// get pointers to the input and output
InputImagePointer inputPtr =
const_cast< TInputImage *>( this->GetInput() );
// Request the entire input image
InputImageRegionType inputRegion;
inputRegion = inputPtr->GetLargestPossibleRegion();
inputPtr->SetRequestedRegion(inputRegion);
return;
}
/**
* Inform pipeline of required output region
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
void
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::GenerateOutputInformation()
{
// call the superclass' implementation of this method
Superclass::GenerateOutputInformation();
// get pointers to the input and output
OutputImagePointer outputPtr = this->GetOutput();
if ( !outputPtr )
{
return;
}
// Set the size of the output region
typename TOutputImage::RegionType outputLargestPossibleRegion;
outputLargestPossibleRegion.SetSize( m_Size );
outputLargestPossibleRegion.SetIndex( m_OutputStartIndex );
outputPtr->SetLargestPossibleRegion( outputLargestPossibleRegion );
// Set spacing and origin
outputPtr->SetSpacing( m_OutputSpacing );
outputPtr->SetOrigin( m_OutputOrigin );
outputPtr->SetDirection( m_OutputDirection );
return;
}
/**
* Verify if any of the components has been modified.
*/
template <class TInputImage, class TOutputImage, class TInterpolatorPrecisionType>
unsigned long
VectorResampleImageFilter<TInputImage,TOutputImage,TInterpolatorPrecisionType>
::GetMTime( void ) const
{
unsigned long latestTime = Object::GetMTime();
if( m_Transform )
{
if( latestTime < m_Transform->GetMTime() )
{
latestTime = m_Transform->GetMTime();
}
}
if( m_Interpolator )
{
if( latestTime < m_Interpolator->GetMTime() )
{
latestTime = m_Interpolator->GetMTime();
}
}
return latestTime;
}
} // end namespace itk
#endif
|