/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkGEAdwImageIO.cxx,v $
  Language:  C++
  Date:      $Date: 2008-01-23 15:30:00 $
  Version:   $Revision: 1.28 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

  This software is distributed WITHOUT ANY WARRANTY; without even
  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  PURPOSE.  See the above copyright notices for more information.

  =========================================================================*/
#include "itkGEAdwImageIO.h"
#include "itkIOCommon.h"
#include <itksys/SystemTools.hxx>

#include "itkExceptionObject.h"
#include "itkByteSwapper.h"
#include "itkGEImageHeader.h"
#include "itkDirectory.h"
#include <iostream>
#include <fstream>
#include <string.h>
#include <limits.h>
#include <stdio.h>
#include <stdlib.h>
#include <stdio.h>
#include <vector>
#include <string>

//From uiig library "The University of Iowa Imaging Group-UIIG"

namespace itk 
{
// Default constructor
GEAdwImageIO::GEAdwImageIO()
{
  //Purposefully left blank
}

GEAdwImageIO::~GEAdwImageIO()
{
  //Purposefully left blank
    
}

bool GEAdwImageIO::CanReadFile( const char* FileNameToRead )
{
  size_t imageSize;
  short matrixX;
  short matrixY;
  int varHdrSize;
  //this->SetFileName(FileNameToRead);
  //
  // Can you open it?
  std::ifstream f(FileNameToRead,std::ios::binary | std::ios::in);
  if(!f.is_open())
    {
    return false;
    }
  //
  // This test basically snoops out the image dimensions, and the
  // length of the variable-length part of the header, and computes
  // the size the file should be and compares it with the actual size.
  // if it's not reading a GEAdw file, chances are overwhelmingly good
  // that this operation will fail somewhere along the line.
  if(this->GetShortAt(f,GE_ADW_IM_IMATRIX_X,&matrixX,false) != 0)
    {
    f.close();
    return false;
    }

  if(this->GetShortAt(f,GE_ADW_IM_IMATRIX_Y,&matrixY,false) != 0)
    {
    f.close();
    return false;
    }

  if(this->GetIntAt(f,GE_ADW_VARIABLE_HDR_LENGTH,&varHdrSize,false) != 0)
    {
    f.close();
    return false;
    }

  imageSize = varHdrSize + GE_ADW_FIXED_HDR_LENGTH + (matrixX * matrixY * sizeof(short));

  if ( imageSize != itksys::SystemTools::FileLength(FileNameToRead) )
    {
    f.close();
    return false;
    }
  f.close();
  return true;
}

GEImageHeader *GEAdwImageIO::ReadHeader(const char *FileNameToRead)
{
  char tmpbuf[1024];

  if(!this->CanReadFile(FileNameToRead))
    {
    RAISE_EXCEPTION();
    }
  GEImageHeader *hdr = new GEImageHeader;
  if(hdr == 0)
    {
    RAISE_EXCEPTION();
    }
  //
  // Next, can you open it?
  std::ifstream f(FileNameToRead,std::ios::binary | std::ios::in);
  if(!f.is_open())
    {
    RAISE_EXCEPTION();
    }
  sprintf(hdr->scanner,"GE-ADW");
  this->GetStringAt(f,GE_ADW_EX_PATID,tmpbuf,12);
  tmpbuf[12] = '\0';
  hdr->patientId[0] = '\0';
  for(char *ptr = strtok(tmpbuf,"-"); ptr != NULL; ptr = strtok(NULL,"-"))
    {
    strcat(hdr->patientId,ptr);
    }

  this->GetStringAt(f,GE_ADW_EX_PATNAME,hdr->name,GE_ADW_EX_PATNAME_LEN);
  hdr->name[GE_ADW_EX_PATNAME_LEN] = '\0';

  this->GetStringAt(f,GE_ADW_EX_HOSPNAME,hdr->hospital,34);
  hdr->hospital[33] = '\0';


  int timeStamp;
  this->GetIntAt(f,GE_ADW_EX_DATETIME,&timeStamp);
  this->statTimeToAscii(&timeStamp,hdr->date);

  this->GetStringAt(f,GE_ADW_SU_PRODID,hdr->scanner,13);
  hdr->scanner[13] = '\0';

  this->GetShortAt(f,GE_ADW_SE_NO,&(hdr->seriesNumber));

  this->GetShortAt(f,GE_ADW_IM_NO,&(hdr->imageNumber));

  this->GetShortAt(f,GE_ADW_IM_CPHASENUM,&(hdr->imagesPerSlice));

  this->GetShortAt(f,GE_ADW_IM_CPHASENUM,&(hdr->turboFactor));

  this->GetFloatAt(f,GE_ADW_IM_SLTHICK,&(hdr->sliceThickness));
  hdr->sliceGap = 0.0f;

  this->GetShortAt(f,GE_ADW_IM_IMATRIX_X,&(hdr->imageXsize));

  this->GetShortAt(f,GE_ADW_IM_IMATRIX_Y,&(hdr->imageYsize));


  hdr->acqXsize = hdr->imageXsize;
  hdr->acqYsize = hdr->imageYsize;
    
  this->GetFloatAt(f,GE_ADW_IM_DFOV,&hdr->xFOV);
  hdr->yFOV = hdr->xFOV;

  this->GetFloatAt(f,GE_ADW_IM_PIXSIZE_X,&hdr->imageXres);

  this->GetFloatAt(f,GE_ADW_IM_PIXSIZE_Y,&hdr->imageYres);

  short tmpShort;
  this->GetShortAt(f,GE_ADW_IM_PLANE,&tmpShort);
  switch (tmpShort)
    {
    case GE_CORONAL:
      //hdr->imagePlane = itk::IOCommon::ITK_ANALYZE_ORIENTATION_IRP_CORONAL;
      //hdr->origin = itk::IOCommon::ITK_ORIGIN_SLA;
      hdr->coordinateOrientation = itk::SpatialOrientation::ITK_COORDINATE_ORIENTATION_RSP;
      break;
    case GE_SAGITTAL:
      //hdr->imagePlane = itk::SpatialOrientation::ITK_ANALYZE_ORIENTATION_IRP_SAGITTAL;
      //hdr->origin = itk::SpatialOrientation::ITK_ORIGIN_SLA;
      hdr->coordinateOrientation = itk::SpatialOrientation::ITK_COORDINATE_ORIENTATION_AIR;
      break;
    case GE_AXIAL:
      //hdr->imagePlane = itk::SpatialOrientation::ITK_ANALYZE_ORIENTATION_IRP_TRANSVERSE;
      //hdr->origin = itk::SpatialOrientation::ITK_ORIGIN_SLA;
      hdr->coordinateOrientation = itk::SpatialOrientation::ITK_COORDINATE_ORIENTATION_RAI;
      break;
    default:
      //hdr->imagePlane = itk::SpatialOrientation::ITK_ANALYZE_ORIENTATION_IRP_CORONAL;
      //hdr->origin = itk::SpatialOrientation::ITK_ORIGIN_SLA;
      hdr->coordinateOrientation = itk::SpatialOrientation::ITK_COORDINATE_ORIENTATION_RSP;
      break;
    }
  this->GetFloatAt(f,GE_ADW_IM_LOC,&(hdr->sliceLocation));

  int tmpInt;
  this->GetIntAt(f,GE_ADW_IM_TR,&tmpInt);
  hdr->TR = (float) tmpInt / 1000.0f;

  this->GetIntAt(f,GE_ADW_IM_TI,&tmpInt);
  hdr->TI = (float) tmpInt / 1000.0f;

  this->GetIntAt(f,GE_ADW_IM_TE,&tmpInt);
  hdr->TE = (float) tmpInt / 1000.0f;

  this->GetShortAt(f, GE_ADW_IM_NUMECHO,&(hdr->numberOfEchoes));

  this->GetShortAt(f, GE_ADW_IM_ECHONUM,&(hdr->echoNumber));

  float tmpFloat;
  this->GetFloatAt(f,GE_ADW_IM_NEX,&tmpFloat);
    
  hdr->NEX = (int) tmpFloat;
    
  this->GetShortAt(f,GE_ADW_IM_MR_FLIP,&hdr->flipAngle);

  this->GetStringAt(f,GE_ADW_IM_PSDNAME, hdr->pulseSequence, 31);
  hdr->pulseSequence[31] = '\0';
    
  this->GetShortAt(f,GE_ADW_IM_SLQUANT,&(hdr->numberOfSlices));

  this->GetIntAt(f,GE_ADW_VARIABLE_HDR_LENGTH,&tmpInt);
  hdr->offset = GE_ADW_FIXED_HDR_LENGTH + tmpInt;

  strncpy (hdr->filename, FileNameToRead, IOCommon::ITK_MAXPATHLEN);
  hdr->filename[IOCommon::ITK_MAXPATHLEN] = '\0';

  return hdr;
}

} // end namespace itk