1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344
|
/*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: $RCSfile: itkImageFileWriter.txx,v $
Language: C++
Date: $Date: 2008-02-13 18:47:11 $
Version: $Revision: 1.54 $
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef __itkImageFileWriter_txx
#define __itkImageFileWriter_txx
#include "itkImageFileWriter.h"
#include "itkDataObject.h"
#include "itkObjectFactoryBase.h"
#include "itkImageIOFactory.h"
#include "itkCommand.h"
#include "vnl/vnl_vector.h"
#include "itkVectorImage.h"
namespace itk
{
//---------------------------------------------------------
template <class TInputImage>
ImageFileWriter<TInputImage>
::ImageFileWriter():
m_FileName(""),
m_ImageIO(0), m_UserSpecifiedImageIO(false),
m_UserSpecifiedIORegion(false)
{
m_UseCompression = false;
m_UseInputMetaDataDictionary = true;
m_FactorySpecifiedImageIO = false;
}
//---------------------------------------------------------
template <class TInputImage>
ImageFileWriter<TInputImage>
::~ImageFileWriter()
{
}
//---------------------------------------------------------
template <class TInputImage>
void
ImageFileWriter<TInputImage>
::SetInput(const InputImageType *input)
{
// ProcessObject is not const_correct so this cast is required here.
this->ProcessObject::SetNthInput(0,
const_cast<TInputImage *>(input ) );
}
//---------------------------------------------------------
template <class TInputImage>
const typename ImageFileWriter<TInputImage>::InputImageType *
ImageFileWriter<TInputImage>
::GetInput(void)
{
if (this->GetNumberOfInputs() < 1)
{
return 0;
}
return static_cast<TInputImage*>
(this->ProcessObject::GetInput(0));
}
//---------------------------------------------------------
template <class TInputImage>
const typename ImageFileWriter<TInputImage>::InputImageType *
ImageFileWriter<TInputImage>
::GetInput(unsigned int idx)
{
return static_cast<TInputImage*> (this->ProcessObject::GetInput(idx));
}
//---------------------------------------------------------
template <class TInputImage>
void
ImageFileWriter<TInputImage>
::SetIORegion (const ImageIORegion& region)
{
itkDebugMacro("setting IORegion to " << region );
if ( m_IORegion != region)
{
m_IORegion = region;
this->Modified();
m_UserSpecifiedIORegion = true;
}
}
//---------------------------------------------------------
template <class TInputImage>
void
ImageFileWriter<TInputImage>
::Write()
{
const InputImageType * input = this->GetInput();
itkDebugMacro( <<"Writing an image file" );
// Make sure input is available
if ( input == 0 )
{
itkExceptionMacro(<< "No input to writer!");
}
// Make sure that we can write the file given the name
//
if ( m_FileName == "" )
{
itkExceptionMacro(<<"No filename was specified");
}
if ( m_ImageIO.IsNull() ) //try creating via factory
{
itkDebugMacro(<<"Attempting factory creation of ImageIO for file: "
<< m_FileName);
m_ImageIO = ImageIOFactory::CreateImageIO( m_FileName.c_str(),
ImageIOFactory::WriteMode );
m_FactorySpecifiedImageIO = true;
}
else
{
if( m_FactorySpecifiedImageIO && !m_ImageIO->CanWriteFile( m_FileName.c_str() ) )
{
itkDebugMacro(<<"ImageIO exists but doesn't know how to write file:"
<< m_FileName );
itkDebugMacro(<<"Attempting creation of ImageIO with a factory for file:"
<< m_FileName);
m_ImageIO = ImageIOFactory::CreateImageIO( m_FileName.c_str(),
ImageIOFactory::WriteMode );
m_FactorySpecifiedImageIO = true;
}
}
if ( m_ImageIO.IsNull() )
{
ImageFileWriterException e(__FILE__, __LINE__);
OStringStream msg;
msg << " Could not create IO object for file "
<< m_FileName.c_str() << std::endl;
msg << " Tried to create one of the following:" << std::endl;
std::list<LightObject::Pointer> allobjects =
ObjectFactoryBase::CreateAllInstance("itkImageIOBase");
for(std::list<LightObject::Pointer>::iterator i = allobjects.begin();
i != allobjects.end(); ++i)
{
ImageIOBase* io = dynamic_cast<ImageIOBase*>(i->GetPointer());
msg << " " << io->GetNameOfClass() << std::endl;
}
msg << " You probably failed to set a file suffix, or" << std::endl;
msg << " set the suffix to an unsupported type." << std::endl;
e.SetDescription(msg.str().c_str());
e.SetLocation(ITK_LOCATION);
throw e;
}
// NOTE: this const_cast<> is due to the lack of const-correctness
// of the ProcessObject.
InputImageType * nonConstImage = const_cast<InputImageType *>(input);
typedef typename TInputImage::RegionType RegionType;
if ( ! m_UserSpecifiedIORegion )
{
// Make sure the data is up-to-date.
if( nonConstImage->GetSource() )
{
nonConstImage->GetSource()->UpdateLargestPossibleRegion();
}
// Write the whole image
ImageIORegion ioRegion(TInputImage::ImageDimension);
RegionType region = input->GetLargestPossibleRegion();
for(unsigned int i=0; i<TInputImage::ImageDimension; i++)
{
ioRegion.SetSize(i,region.GetSize(i));
ioRegion.SetIndex(i,region.GetIndex(i));
}
m_IORegion = ioRegion; //used by GenerateData
}
else
{
nonConstImage->Update();
}
// Setup the ImageIO
//
m_ImageIO->SetNumberOfDimensions(TInputImage::ImageDimension);
RegionType region = input->GetLargestPossibleRegion();
const typename TInputImage::SpacingType& spacing = input->GetSpacing();
const typename TInputImage::PointType& origin = input->GetOrigin();
const typename TInputImage::DirectionType& direction = input->GetDirection();
for(unsigned int i=0; i<TInputImage::ImageDimension; i++)
{
m_ImageIO->SetDimensions(i,region.GetSize(i));
m_ImageIO->SetSpacing(i,spacing[i]);
m_ImageIO->SetOrigin(i,origin[i]);
vnl_vector< double > axisDirection(TInputImage::ImageDimension);
// Please note: direction cosines are stored as columns of the
// direction matrix
for(unsigned int j=0; j<TInputImage::ImageDimension; j++)
{
axisDirection[j] = direction[j][i];
}
m_ImageIO->SetDirection( i, axisDirection );
}
if(m_UserSpecifiedIORegion)
{
m_ImageIO->SetUseStreamedWriting(true);
}
m_ImageIO->SetUseCompression(m_UseCompression);
m_ImageIO->SetIORegion(m_IORegion);
if( m_UseInputMetaDataDictionary )
{
m_ImageIO->SetMetaDataDictionary(input->GetMetaDataDictionary());
}
// Notify start event observers
this->InvokeEvent( StartEvent() );
// Actually do something
this->GenerateData();
// Notify end event observers
this->InvokeEvent( EndEvent() );
// Release upstream data if requested
if ( input->ShouldIReleaseData() )
{
nonConstImage->ReleaseData();
}
}
//---------------------------------------------------------
template <class TInputImage>
void
ImageFileWriter<TInputImage>
::GenerateData(void)
{
const InputImageType * input = this->GetInput();
itkDebugMacro(<<"Writing file: " << m_FileName);
// Make sure that the image is the right type and no more than
// four components.
typedef typename InputImageType::PixelType ScalarType;
if( strcmp( input->GetNameOfClass(), "VectorImage" ) == 0 )
{
typedef typename InputImageType::InternalPixelType VectorImageScalarType;
m_ImageIO->SetPixelTypeInfo( typeid(VectorImageScalarType) );
typedef typename InputImageType::AccessorFunctorType AccessorFunctorType;
m_ImageIO->SetNumberOfComponents( AccessorFunctorType::GetVectorLength(input) );
}
else
{
// Set the pixel and component type; the number of components.
m_ImageIO->SetPixelTypeInfo(typeid(ScalarType));
}
// Setup the image IO for writing.
//
m_ImageIO->SetFileName(m_FileName.c_str());
//okay, now extract the data as a raw buffer pointer
const void* dataPtr = (const void*) input->GetBufferPointer();
m_ImageIO->Write(dataPtr);
}
//---------------------------------------------------------
template <class TInputImage>
void
ImageFileWriter<TInputImage>
::PrintSelf(std::ostream& os, Indent indent) const
{
Superclass::PrintSelf(os,indent);
os << indent << "File Name: "
<< (m_FileName.data() ? m_FileName.data() : "(none)") << std::endl;
os << indent << "Image IO: ";
if ( m_ImageIO.IsNull() )
{
os << "(none)\n";
}
else
{
os << m_ImageIO << "\n";
}
os << indent << "IO Region: " << m_IORegion << "\n";
if (m_UseCompression)
{
os << indent << "Compression: On\n";
}
else
{
os << indent << "Compression: Off\n";
}
if (m_UseInputMetaDataDictionary)
{
os << indent << "UseInputMetaDataDictionary: On\n";
}
else
{
os << indent << "UseInputMetaDataDictionary: Off\n";
}
if (m_FactorySpecifiedImageIO)
{
os << indent << "FactorySpecifiedmageIO: On\n";
}
else
{
os << indent << "FactorySpecifiedmageIO: Off\n";
}
}
} // end namespace itk
#endif
|