File: itkImageFileWriter.txx

package info (click to toggle)
insighttoolkit 3.6.0-3
  • links: PTS
  • area: main
  • in suites: lenny
  • size: 94,956 kB
  • ctags: 74,981
  • sloc: cpp: 355,621; ansic: 195,070; fortran: 28,713; python: 3,802; tcl: 1,996; sh: 1,175; java: 583; makefile: 415; csh: 184; perl: 175
file content (344 lines) | stat: -rw-r--r-- 9,691 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkImageFileWriter.txx,v $
  Language:  C++
  Date:      $Date: 2008-02-13 18:47:11 $
  Version:   $Revision: 1.54 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#ifndef __itkImageFileWriter_txx
#define __itkImageFileWriter_txx

#include "itkImageFileWriter.h"
#include "itkDataObject.h"
#include "itkObjectFactoryBase.h"
#include "itkImageIOFactory.h"
#include "itkCommand.h"
#include "vnl/vnl_vector.h"
#include "itkVectorImage.h"

namespace itk
{

//---------------------------------------------------------
template <class TInputImage>
ImageFileWriter<TInputImage>
::ImageFileWriter():
  m_FileName(""),
  m_ImageIO(0), m_UserSpecifiedImageIO(false),
  m_UserSpecifiedIORegion(false)
{
  m_UseCompression = false;
  m_UseInputMetaDataDictionary = true;
  m_FactorySpecifiedImageIO = false;
}


//---------------------------------------------------------
template <class TInputImage>
ImageFileWriter<TInputImage>
::~ImageFileWriter()
{
}

//---------------------------------------------------------
template <class TInputImage>
void 
ImageFileWriter<TInputImage>
::SetInput(const InputImageType *input)
{
  // ProcessObject is not const_correct so this cast is required here.
  this->ProcessObject::SetNthInput(0, 
                                   const_cast<TInputImage *>(input ) );
}


//---------------------------------------------------------
template <class TInputImage>
const typename ImageFileWriter<TInputImage>::InputImageType *
ImageFileWriter<TInputImage>
::GetInput(void)
{
  if (this->GetNumberOfInputs() < 1)
    {
    return 0;
    }
  
  return static_cast<TInputImage*>
    (this->ProcessObject::GetInput(0));
}
  
//---------------------------------------------------------
template <class TInputImage>
const typename ImageFileWriter<TInputImage>::InputImageType *
ImageFileWriter<TInputImage>
::GetInput(unsigned int idx)
{
  return static_cast<TInputImage*> (this->ProcessObject::GetInput(idx));
}

//---------------------------------------------------------
template <class TInputImage>
void 
ImageFileWriter<TInputImage>
::SetIORegion (const ImageIORegion& region) 
{
  itkDebugMacro("setting IORegion to " << region );
  if ( m_IORegion != region)
    {
    m_IORegion = region;
    this->Modified();
    m_UserSpecifiedIORegion = true;
    }
} 

//---------------------------------------------------------
template <class TInputImage>
void 
ImageFileWriter<TInputImage>
::Write()
{
  const InputImageType * input = this->GetInput();

  itkDebugMacro( <<"Writing an image file" );

  // Make sure input is available
  if ( input == 0 )
    {
    itkExceptionMacro(<< "No input to writer!");
    }

  // Make sure that we can write the file given the name
  //
  if ( m_FileName == "" )
    {
    itkExceptionMacro(<<"No filename was specified");
    }

  if ( m_ImageIO.IsNull() ) //try creating via factory
    {
    itkDebugMacro(<<"Attempting factory creation of ImageIO for file: " 
                  << m_FileName);
    m_ImageIO = ImageIOFactory::CreateImageIO( m_FileName.c_str(), 
                                               ImageIOFactory::WriteMode );
    m_FactorySpecifiedImageIO = true;
    }
  else
    {
    if( m_FactorySpecifiedImageIO && !m_ImageIO->CanWriteFile( m_FileName.c_str() ) )
      {
      itkDebugMacro(<<"ImageIO exists but doesn't know how to write file:" 
                    << m_FileName );
      itkDebugMacro(<<"Attempting creation of ImageIO with a factory for file:"
                    << m_FileName);
      m_ImageIO = ImageIOFactory::CreateImageIO( m_FileName.c_str(), 
                                                 ImageIOFactory::WriteMode );
      m_FactorySpecifiedImageIO = true;
      }
    }

  if ( m_ImageIO.IsNull() )
    {
    ImageFileWriterException e(__FILE__, __LINE__);
    OStringStream msg;
    msg << " Could not create IO object for file "
        << m_FileName.c_str() << std::endl;
    msg << "  Tried to create one of the following:" << std::endl;
    std::list<LightObject::Pointer> allobjects = 
      ObjectFactoryBase::CreateAllInstance("itkImageIOBase");
    for(std::list<LightObject::Pointer>::iterator i = allobjects.begin();
        i != allobjects.end(); ++i)
      {
      ImageIOBase* io = dynamic_cast<ImageIOBase*>(i->GetPointer());
      msg << "    " << io->GetNameOfClass() << std::endl; 
      }
    msg << "  You probably failed to set a file suffix, or" << std::endl;
    msg << "    set the suffix to an unsupported type." << std::endl;
    e.SetDescription(msg.str().c_str());
    e.SetLocation(ITK_LOCATION);
    throw e;
    }

  // NOTE: this const_cast<> is due to the lack of const-correctness
  // of the ProcessObject.
  InputImageType * nonConstImage = const_cast<InputImageType *>(input);

  typedef typename TInputImage::RegionType   RegionType;

  if ( ! m_UserSpecifiedIORegion )
    {
    // Make sure the data is up-to-date.
    if( nonConstImage->GetSource() )
      {
      nonConstImage->GetSource()->UpdateLargestPossibleRegion();
      }
    // Write the whole image
    ImageIORegion ioRegion(TInputImage::ImageDimension);
    RegionType region = input->GetLargestPossibleRegion();

    for(unsigned int i=0; i<TInputImage::ImageDimension; i++)
      {
      ioRegion.SetSize(i,region.GetSize(i));
      ioRegion.SetIndex(i,region.GetIndex(i));
      }
    m_IORegion = ioRegion; //used by GenerateData
    }
  else
    {
    nonConstImage->Update();
    }

  // Setup the ImageIO
  //
  m_ImageIO->SetNumberOfDimensions(TInputImage::ImageDimension);
  RegionType region = input->GetLargestPossibleRegion();
  const typename TInputImage::SpacingType& spacing = input->GetSpacing();
  const typename TInputImage::PointType& origin = input->GetOrigin();
  const typename TInputImage::DirectionType& direction = input->GetDirection();

  for(unsigned int i=0; i<TInputImage::ImageDimension; i++)
    {
    m_ImageIO->SetDimensions(i,region.GetSize(i));
    m_ImageIO->SetSpacing(i,spacing[i]);
    m_ImageIO->SetOrigin(i,origin[i]);
    vnl_vector< double > axisDirection(TInputImage::ImageDimension);
    // Please note: direction cosines are stored as columns of the
    // direction matrix
    for(unsigned int j=0; j<TInputImage::ImageDimension; j++)
      {
      axisDirection[j] = direction[j][i];
      }
    m_ImageIO->SetDirection( i, axisDirection );
    }
    
  if(m_UserSpecifiedIORegion)
    {
    m_ImageIO->SetUseStreamedWriting(true);
    }

  m_ImageIO->SetUseCompression(m_UseCompression);
  m_ImageIO->SetIORegion(m_IORegion);
  if( m_UseInputMetaDataDictionary )
    {
    m_ImageIO->SetMetaDataDictionary(input->GetMetaDataDictionary());
    }
  // Notify start event observers
  this->InvokeEvent( StartEvent() );

  // Actually do something
  this->GenerateData();
  
  // Notify end event observers
  this->InvokeEvent( EndEvent() );

  // Release upstream data if requested
  if ( input->ShouldIReleaseData() )
    {
    nonConstImage->ReleaseData();
    }
}


//---------------------------------------------------------
template <class TInputImage>
void 
ImageFileWriter<TInputImage>
::GenerateData(void)
{
  const InputImageType * input = this->GetInput();

  itkDebugMacro(<<"Writing file: " << m_FileName);
  
  // Make sure that the image is the right type and no more than 
  // four components.
  typedef typename InputImageType::PixelType ScalarType;

  if( strcmp( input->GetNameOfClass(), "VectorImage" ) == 0 ) 
    {
    typedef typename InputImageType::InternalPixelType VectorImageScalarType;
    m_ImageIO->SetPixelTypeInfo( typeid(VectorImageScalarType) );
    
    typedef typename InputImageType::AccessorFunctorType AccessorFunctorType;
    m_ImageIO->SetNumberOfComponents( AccessorFunctorType::GetVectorLength(input) );
    }
  else
    {
    // Set the pixel and component type; the number of components.
    m_ImageIO->SetPixelTypeInfo(typeid(ScalarType));  
    }

  // Setup the image IO for writing.
  //
  m_ImageIO->SetFileName(m_FileName.c_str());

  //okay, now extract the data as a raw buffer pointer
  const void* dataPtr = (const void*) input->GetBufferPointer();
  m_ImageIO->Write(dataPtr);

}


//---------------------------------------------------------
template <class TInputImage>
void 
ImageFileWriter<TInputImage>
::PrintSelf(std::ostream& os, Indent indent) const
{
  Superclass::PrintSelf(os,indent);

  os << indent << "File Name: " 
     << (m_FileName.data() ? m_FileName.data() : "(none)") << std::endl;

  os << indent << "Image IO: ";
  if ( m_ImageIO.IsNull() )
    {
    os << "(none)\n";
    }
  else
    {
    os << m_ImageIO << "\n";
    }

  os << indent << "IO Region: " << m_IORegion << "\n";


  if (m_UseCompression)
    {
    os << indent << "Compression: On\n";
    }
  else
    {
    os << indent << "Compression: Off\n";
    }

  if (m_UseInputMetaDataDictionary)
    {
    os << indent << "UseInputMetaDataDictionary: On\n";
    }
  else
    {
    os << indent << "UseInputMetaDataDictionary: Off\n";
    }

  if (m_FactorySpecifiedImageIO)
    {
    os << indent << "FactorySpecifiedmageIO: On\n";
    }
  else
    {
    os << indent << "FactorySpecifiedmageIO: Off\n";
    }

}

} // end namespace itk

#endif