File: itkFastMarchingExtensionImageFilterTest.cxx

package info (click to toggle)
insighttoolkit 3.6.0-3
  • links: PTS
  • area: main
  • in suites: lenny
  • size: 94,956 kB
  • ctags: 74,981
  • sloc: cpp: 355,621; ansic: 195,070; fortran: 28,713; python: 3,802; tcl: 1,996; sh: 1,175; java: 583; makefile: 415; csh: 184; perl: 175
file content (326 lines) | stat: -rw-r--r-- 8,356 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    $RCSfile: itkFastMarchingExtensionImageFilterTest.cxx,v $
  Language:  C++
  Date:      $Date: 2008-02-03 04:05:34 $
  Version:   $Revision: 1.19 $

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#if defined(_MSC_VER)
#pragma warning ( disable : 4786 )
#endif
#include "itkFastMarchingExtensionImageFilter.h"
#include "itkImage.h"
#include "itkImageRegionIterator.h"
#include "itkCommand.h"

#include "vnl/vnl_math.h"

namespace{
// The following class is used to support callbacks
// on the filter in the pipeline that follows later
class ShowProgressObject
{
public:
  ShowProgressObject(itk::ProcessObject* o)
    {m_Process = o;}
  void ShowProgress()
    {std::cout << "Progress " << m_Process->GetProgress() << std::endl;}
  itk::ProcessObject::Pointer m_Process;
};
}

int itkFastMarchingExtensionImageFilterTest(int, char* [] )
{
  // create a fastmarching object
  typedef float PixelType;
  typedef itk::Image<PixelType,2> FloatImage;
  typedef itk::FastMarchingExtensionImageFilter<FloatImage,unsigned char,1,
    FloatImage> MarcherType;

  MarcherType::Pointer marcher = MarcherType::New();

  ShowProgressObject progressWatch(marcher);
  itk::SimpleMemberCommand<ShowProgressObject>::Pointer command;
  command = itk::SimpleMemberCommand<ShowProgressObject>::New();
  command->SetCallbackFunction(&progressWatch,
                               &ShowProgressObject::ShowProgress);
  marcher->AddObserver( itk::ProgressEvent(), command);


  bool passed;
  
  // setup trial points
  typedef MarcherType::NodeType NodeType;
  typedef MarcherType::NodeContainer NodeContainer;

  // setup alive points
  NodeContainer::Pointer alivePoints = NodeContainer::New();

  NodeType node;

  FloatImage::OffsetType offset0 = {{28,35}};

  itk::Index<2> index;
  index.Fill(0);

  node.SetValue( 0.0 );
  node.SetIndex( index + offset0 );
  alivePoints->InsertElement(0, node);

  node.SetValue( 42.0 );
  index.Fill( 200 );
  node.SetIndex( index ); // this node is out of range
  alivePoints->InsertElement(1, node);
  
  marcher->SetAlivePoints( alivePoints );


  // setup trial points
  NodeContainer::Pointer trialPoints = NodeContainer::New();

  node.SetValue( 1.0 );

  index.Fill(0);
  index += offset0;

  index[0] += 1;
  node.SetIndex( index );
  trialPoints->InsertElement(0, node);

  index[0] -= 1;
  index[1] += 1;
  node.SetIndex( index );
  trialPoints->InsertElement(1, node);

  index[0] -= 1;
  index[1] -= 1;
  node.SetIndex( index );
  trialPoints->InsertElement(2, node);

  index[0] += 1;
  index[1] -= 1;
  node.SetIndex( index );
  trialPoints->InsertElement(3, node);

  node.SetValue( 42.0 );
  index.Fill( 300 ); // this node is out of ranage
  node.SetIndex( index );
  trialPoints->InsertElement(4, node);

  marcher->SetTrialPoints( trialPoints );

  // specify the size of the output image
  FloatImage::SizeType size = {{64,64}};
  marcher->SetOutputSize( size );

  // setup a speed image of ones
  FloatImage::Pointer speedImage = FloatImage::New();
  FloatImage::RegionType region;
  region.SetSize( size );
  speedImage->SetLargestPossibleRegion( region );
  speedImage->SetBufferedRegion( region );
  speedImage->Allocate();

  itk::ImageRegionIterator<FloatImage>
    speedIter( speedImage, speedImage->GetBufferedRegion() );
  for ( ; !speedIter.IsAtEnd(); ++speedIter )
    {
    speedIter.Set( 1.0 );
    }

  marcher->SetInput( speedImage );
  marcher->SetStoppingValue( 100.0 );

  // deliberately cause an exception by not setting AuxAliveValues
  passed = false;
  try
    {
    marcher->Update();
    }
  catch ( itk::ExceptionObject & err )
    {
    passed = true;
    marcher->ResetPipeline();
    std::cout << err << std::endl;
    }
  if ( !passed ) { return EXIT_FAILURE; }

  typedef MarcherType::AuxValueVectorType VectorType;
  typedef MarcherType::AuxValueContainer AuxValueContainer;

  AuxValueContainer::Pointer auxAliveValues = AuxValueContainer::New();

  // deliberately cause an exception setting AuxAliveValues of the wrong size
  marcher->SetAuxiliaryAliveValues( auxAliveValues );

  passed = false;
  try
    {
    marcher->Update();
    }
  catch ( itk::ExceptionObject & err )
    {
    passed = true;
    marcher->ResetPipeline();
    std::cout << err << std::endl;
    }
  if ( !passed ) { return EXIT_FAILURE; }


  VectorType vector;
  vector[0] = 48;

  auxAliveValues->InsertElement(0,vector);
  auxAliveValues->InsertElement(1,vector);

  // deliberately cause an exception by not setting AuxTrialValues
  passed = false;
  try
    {
    marcher->Update();
    }
  catch ( itk::ExceptionObject & err )
    {
    passed = true;
    marcher->ResetPipeline();
    std::cout << err << std::endl;
    }
  if ( !passed ) { return EXIT_FAILURE; }

  AuxValueContainer::Pointer auxTrialValues = AuxValueContainer::New();

  // deliberately cause an exception setting AuxTrialValues of the wrong size
  marcher->SetAuxiliaryTrialValues( auxTrialValues );

  passed = false;
  try
    {
    marcher->Update();
    }
  catch ( itk::ExceptionObject & err )
    {
    passed = true;
    marcher->ResetPipeline();
    std::cout << err << std::endl;
    }
  if ( !passed ) { return EXIT_FAILURE; }


  auxTrialValues->InsertElement(0,vector);
  auxTrialValues->InsertElement(1,vector);
  auxTrialValues->InsertElement(2,vector);
  auxTrialValues->InsertElement(3,vector);
  auxTrialValues->InsertElement(4,vector);
 

  // run the algorithm
  passed = true;
  try
    {
    marcher->Update();
    }
  catch ( itk::ExceptionObject & err )
    {
    passed = false;
    marcher->ResetPipeline();
    std::cout << err << std::endl;
    }
  if ( !passed ) { return EXIT_FAILURE; }


  // check the results
  passed = true;
  FloatImage::Pointer output = marcher->GetOutput();
  itk::ImageRegionIterator<FloatImage>
    iterator( output, output->GetBufferedRegion() );

  typedef MarcherType::AuxImageType AuxImageType;
  AuxImageType::Pointer auxImage = marcher->GetAuxiliaryImage(0);
  itk::ImageRegionIterator<AuxImageType>
    auxIterator( auxImage, auxImage->GetBufferedRegion() );


  for ( ; !iterator.IsAtEnd(); ++iterator, ++auxIterator )
    {

    FloatImage::IndexType tempIndex;
    double distance;
    float outputValue;

    tempIndex = iterator.GetIndex();
    tempIndex -= offset0;
    distance = 0.0;
    for ( int j = 0; j < 2; j++ )
      {
      distance += tempIndex[j] * tempIndex[j];
      }
    distance = vcl_sqrt( distance );

    outputValue = (float) iterator.Get();

    if (distance == 0)
      {
      continue;
      }
    if ( vnl_math_abs( outputValue ) / distance > 1.42 )
      {
      std::cout << iterator.GetIndex() << " ";
      std::cout << vnl_math_abs( outputValue ) / distance << " ";
      std::cout << vnl_math_abs( outputValue ) << " " << distance << std::endl;
      passed = false;
      break;
      }

    if ( auxIterator.Get() != vector[0] )
      {
      std::cout << auxIterator.GetIndex()
                << " got aux value of " << (double) auxIterator.Get()
                << " but it should be  " << (double) vector[0]
                << std::endl;
      passed = false;
      break;
      }
    
    }

  // Exercise other member functions
  std::cout << "Auxiliary alive values: " << marcher->GetAuxiliaryAliveValues();
  std::cout << std::endl;

  std::cout << "Auxiliary trial values: " << marcher->GetAuxiliaryTrialValues();
  std::cout << std::endl;

  marcher->Print( std::cout );

  if ( marcher->GetAuxiliaryImage(2) )
    {
    std::cout << "GetAuxiliaryImage(2) should have returned NULL";
    std::cout << std::endl;
    passed = false;
    } 

  if ( passed )
    {
    std::cout << "Fast Marching test passed" << std::endl;
    return EXIT_SUCCESS;
    }
  else
    {
    std::cout << "Fast Marching test failed" << std::endl;
    return EXIT_FAILURE;
    }


return EXIT_SUCCESS;

}