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/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#include "itkImageFileReader.h"
#include "itkImageSeriesWriter.h"
#include "itkNumericSeriesFileNames.h"
#include "itkJPEG2000ImageIOFactory.h"
#include <fstream>
int itkJPEG2000ImageIOTest05( int argc, char * argv[] )
{
if( argc < 2 )
{
std::cerr << "Usage: " << argv[0] << " input outputdir extension" << std::endl;
return EXIT_FAILURE;
}
typedef unsigned char PixelType;
typedef itk::Image<PixelType,3> ImageType;
typedef itk::Image<PixelType,2> OutputImageType;
typedef itk::ImageFileReader<ImageType> ReaderType;
ReaderType::Pointer reader = ReaderType::New();
reader->SetFileName( argv[1] );
//reader->SetUseStreaming( true );
try
{
reader->Update();
reader->GetOutput()->Print(std::cout);
}
catch (itk::ExceptionObject &ex)
{
std::cout << ex;
return EXIT_FAILURE;
}
// Register the factory
itk::JPEG2000ImageIOFactory::RegisterOneFactory();
itk::NumericSeriesFileNames::Pointer fit = itk::NumericSeriesFileNames::New();
typedef itk::ImageSeriesWriter<ImageType,OutputImageType> WriterType;
WriterType::Pointer writer = WriterType::New();
char format[4096];
sprintf (format, "%s/series.%%d.%s", argv[2], argv[3]);
std::cout << "Format = " << format << std::endl;
ImageType::RegionType region = reader->GetOutput()->GetBufferedRegion();
ImageType::SizeType size = region.GetSize();
fit->SetStartIndex(0);
fit->SetEndIndex(size[2]-1); // The number of slices to write
fit->SetIncrementIndex(1);
fit->SetSeriesFormat (format);
writer->SetInput(reader->GetOutput());
writer->SetFileNames( fit->GetFileNames() );
try
{
writer->Update();
}
catch( itk::ExceptionObject & excp )
{
std::cerr << "Error while writing the series with SeriesFileNames generator" << std::endl;
std::cerr << excp << std::endl;
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}
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