1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
|
set(BASELINE ${ITK_DATA_ROOT}/Baseline/Segmentation)
set(TEMP ${ITK_BINARY_DIR}/Testing/Temporary)
itk_add_test(NAME ConfidenceConnectedWhiteTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ConfidenceConnectedWhiteTest.png}
${TEMP}/ConfidenceConnectedWhiteTest.png
$<TARGET_FILE:ConfidenceConnected>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ConfidenceConnectedWhiteTest.png
60 116
)
itk_add_test(NAME ConfidenceConnectedVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ConfidenceConnectedVentricleTest.png}
${TEMP}/ConfidenceConnectedVentricleTest.png
$<TARGET_FILE:ConfidenceConnected>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ConfidenceConnectedVentricleTest.png
81 112
)
itk_add_test(NAME ConfidenceConnectedGrayTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ConfidenceConnectedGrayTest.png}
${TEMP}/ConfidenceConnectedGrayTest.png
$<TARGET_FILE:ConfidenceConnected>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ConfidenceConnectedGrayTest.png
107 69
)
itk_add_test(NAME ConnectedThresholdWhiteTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ConnectedThresholdWhiteTest.png}
${TEMP}/ConnectedThresholdWhiteTest.png
$<TARGET_FILE:ConnectedThresholdImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ConnectedThresholdWhiteTest.png
60 116 150 180
)
itk_add_test(NAME ConnectedThresholdVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ConnectedThresholdVentricleTest.png}
${TEMP}/ConnectedThresholdVentricleTest.png
$<TARGET_FILE:ConnectedThresholdImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ConnectedThresholdVentricleTest.png
81 112 210 250
)
itk_add_test(NAME ConnectedThresholdGrayTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ConnectedThresholdGrayTest.png}
${TEMP}/ConnectedThresholdGrayTest.png
$<TARGET_FILE:ConnectedThresholdImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ConnectedThresholdGrayTest.png
107 69 180 210
)
itk_add_test(NAME FastMarchingLeftVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/FastMarchingLeftVentricleTest.png,:}
${TEMP}/FastMarchingLeftVentricleTest.png
$<TARGET_FILE:FastMarchingImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/FastMarchingLeftVentricleTest.png
81 114 1.0 -0.5 3.0 100 100 debug1.png debug2.png debug3.png
)
itk_add_test(NAME FastMarchingRightVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/FastMarchingRightVentricleTest.png,:}
${TEMP}/FastMarchingRightVentricleTest.png
$<TARGET_FILE:FastMarchingImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/FastMarchingRightVentricleTest.png
99 114 1.0 -0.5 3.0 100 100 debug1.png debug2.png debug3.png
)
itk_add_test(NAME FastMarchingWhiteMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/FastMarchingWhiteMatterTest.png,:}
${TEMP}/FastMarchingWhiteMatterTest.png
$<TARGET_FILE:FastMarchingImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/FastMarchingWhiteMatterTest.png
56 92 1.0 -0.3 2.0 200 100 debug1.png debug2.png debug3.png
)
itk_add_test(NAME FastMarchingGrayMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/FastMarchingGrayMatterTest.png,:}
${TEMP}/FastMarchingGrayMatterTest.png
$<TARGET_FILE:FastMarchingImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/FastMarchingGrayMatterTest.png
40 90 .5 -0.3 2.0 200 100 debug1.png debug2.png debug3.png
)
itk_add_test(NAME GeodesicActiveContourLeftVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/GeodesicActiveContourLeftVentricleTest.png,:}
${TEMP}/GeodesicActiveContourLeftVentricleTest.png
$<TARGET_FILE:GeodesicActiveContourImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/GeodesicActiveContourLeftVentricleTest.png
81 114 5.0 1.0 -0.5 3.0 2.0
)
itk_add_test(NAME GeodesicActiveContourRightVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/GeodesicActiveContourRightVentricleTest.png,:}
${TEMP}/GeodesicActiveContourRightVentricleTest.png
$<TARGET_FILE:GeodesicActiveContourImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/GeodesicActiveContourRightVentricleTest.png
99 114 5.0 1.0 -0.5 3.0 2.0
)
itk_add_test(NAME GeodesicActiveContourWhiteMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/GeodesicActiveContourWhiteMatterTest.png,:}
${TEMP}/GeodesicActiveContourWhiteMatterTest.png
$<TARGET_FILE:GeodesicActiveContourImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/GeodesicActiveContourWhiteMatterTest.png
56 92 5.0 1.0 -0.3 2.0 10.0
)
itk_add_test(NAME GeodesicActiveContourGrayMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/GeodesicActiveContourGrayMatterTest.png,:}
${TEMP}/GeodesicActiveContourGrayMatterTest.png
$<TARGET_FILE:GeodesicActiveContourImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/GeodesicActiveContourGrayMatterTest.png
40 90 5.0 .5 -0.3 2.0 10.0
)
itk_add_test(NAME ShapeDetectionLevelSetLeftVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ShapeDetectionLevelSetLeftVentricleTest.png,:}
${TEMP}/ShapeDetectionLevelSetLeftVentricleTest.png
$<TARGET_FILE:ShapeDetectionLevelSetFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ShapeDetectionLevelSetLeftVentricleTest.png
81 114 5.0 1.0 -0.5 3.0 0.05 1.0
)
itk_add_test(NAME ShapeDetectionLevelSetRightVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ShapeDetectionLevelSetRightVentricleTest.png,:}
${TEMP}/ShapeDetectionLevelSetRightVentricleTest.png
$<TARGET_FILE:ShapeDetectionLevelSetFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ShapeDetectionLevelSetRightVentricleTest.png
99 114 5.0 1.0 -0.5 3.0 0.05 1.0
)
itk_add_test(NAME ShapeDetectionLevelSetWhiteMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ShapeDetectionLevelSetWhiteMatterTest.png,:}
${TEMP}/ShapeDetectionLevelSetWhiteMatterTest.png
$<TARGET_FILE:ShapeDetectionLevelSetFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ShapeDetectionLevelSetWhiteMatterTest.png
56 92 5.0 1.0 -0.3 2.0 0.05 1.0
)
itk_add_test(NAME ShapeDetectionLevelSetGrayMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ShapeDetectionLevelSetGrayMatterTest.png,:}
${TEMP}/ShapeDetectionLevelSetGrayMatterTest.png
$<TARGET_FILE:ShapeDetectionLevelSetFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ShapeDetectionLevelSetGrayMatterTest.png
40 90 5.0 1.0 -0.3 2.0 0.05 1.0
)
itk_add_test(NAME ThresholdSegmentationLevelSetVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ThresholdSegmentationLevelSetVentricleTest.png,:}
${TEMP}/ThresholdSegmentationLevelSetVentricleTest.png
$<TARGET_FILE:ThresholdSegmentationLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ThresholdSegmentationLevelSetVentricleTest.png
81 112 5 210 250
)
itk_add_test(NAME ThresholdSegmentationLevelSetWhiteMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ThresholdSegmentationLevelSetWhiteMatterTest.png,:}
${TEMP}/ThresholdSegmentationLevelSetWhiteMatterTest.png
--compareNumberOfPixelsTolerance 40
$<TARGET_FILE:ThresholdSegmentationLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ThresholdSegmentationLevelSetWhiteMatterTest.png
60 116 5 150 180
)
itk_add_test(NAME ThresholdSegmentationLevelSetGrayMatterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/ThresholdSegmentationLevelSetGrayMatterTest.png,:}
${TEMP}/ThresholdSegmentationLevelSetGrayMatterTest.png
$<TARGET_FILE:ThresholdSegmentationLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/ThresholdSegmentationLevelSetGrayMatterTest.png
107 69 5 180 210
)
itk_add_test(NAME CellularSegmentation1Test COMMAND ${ITK_TEST_DRIVER}
$<TARGET_FILE:CellularSegmentation1>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
100 115 200 255 3000
${TEMP}/CellularSegmentation1Test.vtk
)
if( ITK_USE_BRAINWEB_DATA )
itk_add_test(NAME CellularSegmentation2Test COMMAND ${ITK_TEST_DRIVER}
$<TARGET_FILE:CellularSegmentation2>
DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
81 113 96 220 255 2000
${TEMP}/CellularSegmentation2Test.vtk
)
endif()
itk_add_test(NAME VectorConfidenceConnectedTest1 COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/VectorConfidenceConnected1.png}
${TEMP}/VectorConfidenceConnected1.png
$<TARGET_FILE:VectorConfidenceConnected>
${ITK_SOURCE_DIR}/Examples/Data/VisibleWomanEyeSlice.png
${TEMP}/VectorConfidenceConnected1.png
70 120 7 1
)
itk_add_test(NAME VectorConfidenceConnectedTest2 COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/VectorConfidenceConnected2.png}
${TEMP}/VectorConfidenceConnected2.png
$<TARGET_FILE:VectorConfidenceConnected>
${ITK_SOURCE_DIR}/Examples/Data/VisibleWomanEyeSlice.png
${TEMP}/VectorConfidenceConnected2.png
23 93 7 1
)
itk_add_test(NAME VectorConfidenceConnectedTest3 COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/VectorConfidenceConnected3.png}
${TEMP}/VectorConfidenceConnected3.png
$<TARGET_FILE:VectorConfidenceConnected>
${ITK_SOURCE_DIR}/Examples/Data/VisibleWomanEyeSlice.png
${TEMP}/VectorConfidenceConnected3.png
66 66 3 1
)
itk_add_test(NAME CannySegmentationLevelSetImageFilterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/CannySegmentationLevelSetImageFilterTest.png}
${TEMP}/CannySegmentationLevelSetImageFilterTest.png
$<TARGET_FILE:CannySegmentationLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
DATA{${BASELINE}/ThresholdSegmentationLevelSetVentricle.png}
${TEMP}/CannySegmentationLevelSetImageFilterTest.png
7 0.1 -10.0 127.5 10000
)
itk_add_test(NAME GeodesicActiveContourShapePriorCallosumTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/GeodesicActiveContourShapePriorCallosumTest.png}
${TEMP}/GeodesicActiveContourShapePriorCallosumTest.png
$<TARGET_FILE:GeodesicActiveContourShapePriorLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainMidSagittalSlice.png
${TEMP}/GeodesicActiveContourShapePriorCallosumTest.png
120 85 60 102 88 83 6 1.0 0.5 0.02
${ITK_SOURCE_DIR}/Examples/Data/CorpusCallosumMeanShape.mha 3
${ITK_SOURCE_DIR}/Examples/Data/CorpusCallosumMode%d.mha 10 0
)
itk_add_test(NAME NeighborhoodConnectedWhiteTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/NeighborhoodConnectedWhiteTest.png}
${TEMP}/NeighborhoodConnectedWhiteTest.png
$<TARGET_FILE:NeighborhoodConnectedImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/NeighborhoodConnectedWhiteTest.png
60 116 150 180
)
itk_add_test(NAME NeighborhoodConnectedVentricleTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/NeighborhoodConnectedVentricleTest.png}
${TEMP}/NeighborhoodConnectedVentricleTest.png
$<TARGET_FILE:NeighborhoodConnectedImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/NeighborhoodConnectedVentricleTest.png
81 112 210 250
)
itk_add_test(NAME NeighborhoodConnectedGrayTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/NeighborhoodConnectedGrayTest.png}
${TEMP}/NeighborhoodConnectedGrayTest.png
$<TARGET_FILE:NeighborhoodConnectedImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/NeighborhoodConnectedGrayTest.png
107 69 180 210
)
itk_add_test(NAME IsolatedConnectedTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/IsolatedConnectedTest.png}
${TEMP}/IsolatedConnectedTest.png
$<TARGET_FILE:IsolatedConnectedImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/IsolatedConnectedTest.png
61 140 150 63 43
)
itk_add_test(NAME RelabelComponentImageFilterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/RelabelComponentImageFilter.png}
${TEMP}/RelabelComponentImageFilter.png
$<TARGET_FILE:RelabelComponentImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/WatershedSegmentation.png
${TEMP}/RelabelComponentImageFilter.png
)
itk_add_test(NAME WatershedSegmentation1Test1 COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/WatershedSegmentation1Test1.png}
${TEMP}/WatershedSegmentation1Test1.png
$<TARGET_FILE:WatershedSegmentation1>
${ITK_SOURCE_DIR}/Examples/Data/VisibleWomanEyeSlice.png
${TEMP}/WatershedSegmentation1Test1.png
2.0 10 0.0 0.05 1
)
itk_add_test(NAME WatershedSegmentation1Test2 COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/WatershedSegmentation1Test2.png}
${TEMP}/WatershedSegmentation1Test2.png
$<TARGET_FILE:WatershedSegmentation1>
${ITK_SOURCE_DIR}/Examples/Data/VisibleWomanEyeSlice.png
${TEMP}/WatershedSegmentation1Test2.png
2.0 10 0.001 0.15 0
)
itk_add_test(NAME CurvesLevelSetImageFilterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/CurvesLevelSetImageFilterTest.png}
${TEMP}/CurvesLevelSetImageFilterTest.png
$<TARGET_FILE:CurvesLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
${TEMP}/CurvesLevelSetImageFilterTest.png
81 114 5.0 1.0 -0.5 3.0 2.0
)
itk_add_test(NAME HoughTransformTwo2DLinesTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/HoughTransformTwoLinesTest.png}
${TEMP}/HoughTransformTwoLinesTest.png
$<TARGET_FILE:HoughTransform2DLinesImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/HoughTransformTwoLines.png
${TEMP}/HoughTransformTwoLinesTest.png
2 5 10
)
itk_add_test(NAME HoughTransformTwo2DCirclesTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/HoughTransformTwoCirclesTest.png}
${TEMP}/HoughTransformTwoCirclesTest.png
$<TARGET_FILE:HoughTransform2DCirclesImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/HoughTransformTwoCircles.png
${TEMP}/HoughTransformTwoCirclesTest.png
2 6 20 3.14 10 5 1.5
)
itk_add_test(NAME LaplacianSegmentationLevelSetImageFilterTest COMMAND ${ITK_TEST_DRIVER}
--compare DATA{${BASELINE}/LaplacianSegmentationLevelSetImageFilter.png}
${TEMP}/LaplacianSegmentationLevelSetImageFilter.png
$<TARGET_FILE:LaplacianSegmentationLevelSetImageFilter>
${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySlice.png
DATA{${BASELINE}/ThresholdSegmentationLevelSetVentricle.png}
${TEMP}/LaplacianSegmentationLevelSetImageFilter.png
10 2.0 1 127.5 15
)
|
