File: ContentLinkSynchronization.sh

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#!/usr/bin/env bash
#==========================================================================
#
#   Copyright Insight Software Consortium
#
#   Licensed under the Apache License, Version 2.0 (the "License");
#   you may not use this file except in compliance with the License.
#   You may obtain a copy of the License at
#
#          http://www.apache.org/licenses/LICENSE-2.0.txt
#
#   Unless required by applicable law or agreed to in writing, software
#   distributed under the License is distributed on an "AS IS" BASIS,
#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#   See the License for the specific language governing permissions and
#   limitations under the License.
#
#==========================================================================*/

# This script, given an ExternalData object store, checks all ExternalData
# .md5 and .sha512 content links in the ITK source, verifies that hashes
# correspond to the same file, and creates both .md5 and .sha512 hashes if
# they are missing.
#
# If content link verification fails, the script notifies the caller and exits.
# The error should be resolved manually before re-execution.
#
# Once executed, a commit can be created from the result.
#
# This script should be executed prior to releases. After any missing content
# links have been merged, the scripts to archive testing data on the Midas and
# Girder stores should be executed.

die() {
  echo -e "$@" 1>&2; exit 1
}
do_cleanup=false
object_store=""
help=false
while [[ $# -gt 0 ]] ;
do
    opt="$1";
    shift;
    case "$opt" in
        "-h"|"--help")
           help=true;;
        "--cleanup" )
           do_cleanup=true;;
        *) if test "${object_store}" = "" ; then object_store=$opt; else echo >&2 "Invalid option: $opt"; exit 1; fi;;
   esac
done

if test "${object_store}" = "" || $help; then
  die "Usage: $0 <ExternalData_OBJECT_STORES path> [--cleanup]"
fi

if ! type md5sum > /dev/null; then
  die "Please install the md5sum executable."
fi
if ! type sha512sum > /dev/null; then
  die "Please install the sha512sum executable."
fi

top_level_dir=$(git rev-parse --show-toplevel)
cd "$top_level_dir"

mkdir -p ${object_store}/{MD5,SHA512}

verify_and_create() {
  algo=$1
  alt_algo=$2

  algo_upper=$(echo $algo | awk '{print toupper($0)}')
  alt_algo_upper=$(echo $alt_algo | awk '{print toupper($0)}')

  find . -name "*.${algo}" -print0 | while read -d ''  -r algo_file; do
    echo "Content link ${algo_file} ..."
    if test -z "${algo_file}"; then
      die "Empty content link!"
      continue
    fi
    algo_hash=$(cat "${algo_file}" | tr -d '[[:space:]]')
    alt_algo_file=${algo_file%\.*}.${alt_algo}
    if test ! -e "${object_store}/${algo_upper}/${algo_hash}"; then
      if test -e "${alt_algo_file}"; then
        alt_algo_hash=$(cat "${alt_algo_file}" | tr -d '[[:space:]]')
        if test -e "${object_store}/${alt_algo_upper}/${alt_algo_hash}"; then
          echo "Found object in ${alt_algo} store, copying to ${algo} store..."
          cp "${object_store}/${alt_algo_upper}/${alt_algo_hash}" "${object_store}/${algo_upper}/${algo_hash}"
        else
          die "Could not find data object in store!"
        fi
      else
        die "Could not find data object in store!"
      fi
    fi
    echo "Verifying    ${algo_file}..."
    object_algo_hash=$(${algo}sum "${object_store}/${algo_upper}/${algo_hash}" | cut -f 1 -d ' ')
    if test "${algo_hash}" != "${object_algo_hash}"; then
      die "Error!: ${algo}sum in file ${algo_file} does not equal hash for \n\n${object_store}/${algo_upper}/${algo_hash}"
    fi

    object_alt_algo_hash=$(${alt_algo}sum "${object_store}/${algo_upper}/${algo_hash}" | cut -f 1 -d ' ')
    if test -e  "${alt_algo_file}"; then
      echo "Verifying    ${alt_algo_file}..."
      alt_algo_hash=$(cat "${alt_algo_file}" | tr -d '[[:space:]]')
      if test "${alt_algo_hash}" != "${object_alt_algo_hash}"; then
        die "Error!: ${alt_algo}sum in file ${alt_ago_file} does not equal hash for \n\n${object_store}/${algo_upper}/${algo_hash}"
      fi
    else
      echo "Creating     ${alt_algo_file}..."
      echo "${object_alt_algo_hash}" > "${alt_algo_file}"
      cp "${object_store}/${algo_upper}/${algo_hash}" "${object_store}/${alt_algo_upper}/${alt_algo_hash}"
    fi
  done || exit 1
}

cleanup() {
  algo=$1
  alt_algo=$2

  algo_upper=$(echo $algo | awk '{print toupper($0)}')
  alt_algo_upper=$(echo $alt_algo | awk '{print toupper($0)}')

  for algo_file_name in `ls "${object_store}/${algo_upper}"`; do
    algo_file=${object_store}/${algo_upper}/${algo_file_name}
    echo "Verifying  ${algo_file}"
    alt_algo_file=$(${alt_algo}sum "${algo_file}"  | cut -f 1 -d ' ')
    if test ! -e "${object_store}/${alt_algo_upper}/${alt_algo_file}"; then
      die "extra file ${algo_file} ..."
    fi
  done || exit 1
}


verify_and_create md5 sha512
verify_and_create sha512 md5

if $do_cleanup; then
  cleanup md5 sha512
  cleanup sha512 md5
fi

echo ""
echo "Verification completed successfully."
echo ""
echo "Commit new content links as necessary."