1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
|
/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
/*
* This is a test file for the itkImageMaskSpatialObject class.
* the Bounding box for an itk::ImageMaskSpatialObject should
* be related to the inside (axis aligned region) of the spatial object
* It Tests both 2D and 3D cases
*/
/*
* This test addresses bug
* https://issues.itk.org/jira/browse/ITK-3153
*
*/
#include <itkSpatialObjectToImageFilter.h>
#include <itkBoxSpatialObject.h>
#include <itkImageMaskSpatialObject.h>
namespace
{
int Test3dImageMask()
{
typedef itk::BoxSpatialObject< 3 > BoxType;
typedef BoxType::TransformType TransformType;
//Box1 ---
// bounding box of [0,1] x [0,1] x [0,1]
// then translate it by 7 in all directions
// bounding box should by [7,8] x [7,8] x [7,8]
BoxType::Pointer box1 = BoxType::New();
BoxType::SizeType sizeArray;
sizeArray[0] = 1;
sizeArray[1] = 1;
sizeArray[2] = 1;
box1->SetSize( sizeArray );
box1->SetDefaultInsideValue(1);
box1->SetDefaultOutsideValue(0);
TransformType::Pointer transform = TransformType::New();
TransformType::OutputVectorType translation;
transform->SetIdentity();
translation[0] = 7;
translation[1] = 7;
translation[2] = 7;
transform->Translate(translation);
box1->SetObjectToWorldTransform( transform.GetPointer() );
box1->ComputeBoundingBox();
BoxType::BoundingBoxType::Pointer box1BoundingBox = box1->GetBoundingBox();
BoxType::BoundingBoxType::BoundsArrayType box1Bounds = box1BoundingBox->GetBounds();
if ( itk::Math::NotAlmostEquals( box1Bounds[0], 7.0 ) || itk::Math::NotAlmostEquals( box1Bounds[2], 7.0 ) || itk::Math::NotAlmostEquals( box1Bounds[4], 7.0 ) ||
itk::Math::NotAlmostEquals( box1Bounds[1], 8.0 ) || itk::Math::NotAlmostEquals( box1Bounds[3], 8.0 ) || itk::Math::NotAlmostEquals( box1Bounds[5], 8.0 ) )
{
std::cout << "Box1 - Bounding box Error"<<std::endl;
std::cout << " Expecting a bounding box of [7 8 7 8 7 8]" << std::endl;
std::cout << " But received one of " << box1Bounds << std::endl;
return EXIT_FAILURE;
}
//Now generate an imageMaskSpatial Object from box1
//Should have the same bounding box.
typedef itk::Image<unsigned char, 3> ImageType;
typedef itk::ImageMaskSpatialObject<3> ImageMaskSpatialObjectType;
typedef itk::SpatialObjectToImageFilter<
BoxType, ImageType > SpatialObjectToImageFilterType;
SpatialObjectToImageFilterType::Pointer imageFilter =
SpatialObjectToImageFilterType::New();
// note visual studio 2015 u1 (release mode) fails to exectute .Fill properly here by not initializing the last member. With initializer it is happy.
itk::Size<3> size = { {10, 10 ,10} };
//size.Fill(10)
// The SpatialObjectToImageFilter requires that the user defines the grid
// parameters of the output image. This includes the number of pixels along
// each dimension, the pixel spacing, image direction and
imageFilter->SetSize( size );
double origin[3];
origin[0] = 5;
origin[1] = 5;
origin[2] = 5;
imageFilter->SetOrigin( origin );
ImageType::SpacingType spacing;
spacing[0] = 5.0 / size[0];
spacing[1] = 5.0 / size[1];
spacing[2] = 5.0 / size[2];
imageFilter->SetSpacing( spacing );
imageFilter->SetInsideValue(255); // white
imageFilter->SetOutsideValue( 0 );
imageFilter->SetInput(box1);
imageFilter->Update();
ImageMaskSpatialObjectType::Pointer maskSpatialObject = ImageMaskSpatialObjectType::New();
maskSpatialObject->SetImage(imageFilter->GetOutput());
maskSpatialObject->ComputeBoundingBox();
ImageMaskSpatialObjectType::BoundingBoxType::Pointer maskBoundingBox = maskSpatialObject->GetBoundingBox();
ImageMaskSpatialObjectType::BoundingBoxType::BoundsArrayType maskBounds = maskBoundingBox->GetBounds();
//Test a few points...
ImageMaskSpatialObjectType::PointType point;
std::cout << "Mask -- Bounds : " << maskBounds << std::endl;
point[0] = 0;point[1] = 0;point[2] = 0;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 6;point[1] = 7;point[2] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 7;point[1] = 7;point[2] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 8;point[1] = 7;point[2] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 8;point[1] = 8;point[2] = 8;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 9;point[1] = 7;point[2] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
if( itk::Math::NotAlmostEquals(maskBounds[0], 7.0)
|| itk::Math::NotAlmostEquals(maskBounds[1], 8.5)
|| itk::Math::NotAlmostEquals(maskBounds[2], 7.0)
|| itk::Math::NotAlmostEquals(maskBounds[3], 8.5)
|| itk::Math::NotAlmostEquals(maskBounds[4], 7.0)
|| itk::Math::NotAlmostEquals(maskBounds[5], 8.5) )
{
std::cout << "[FAILED] " << std::endl;
std::cout << "Test returned : " << maskSpatialObject->GetBoundingBox()->GetBounds() << std::endl;
std::cout << "Instead of : [7, 8.5, 7, 8.5, 7, 8.5]" << std::endl;
return EXIT_FAILURE;
}
std::cout << "[Passed] -- 3D test" << std::endl;
return EXIT_SUCCESS;
}
int Test2dImageMask()
{
typedef itk::BoxSpatialObject< 2 > BoxType;
typedef BoxType::TransformType TransformType;
//Box1 ---
// bounding box of [0,1] x [0,1]
// then translate it by 7 in all directions
// bounding box should by [7,8] x [7,8]
BoxType::Pointer box1 = BoxType::New();
BoxType::SizeType sizeArray;
sizeArray[0] = 1;
sizeArray[1] = 1;
box1->SetSize( sizeArray );
box1->SetDefaultInsideValue(1);
box1->SetDefaultOutsideValue(0);
TransformType::Pointer transform = TransformType::New();
TransformType::OutputVectorType translation;
transform->SetIdentity();
translation[0] = 7;
translation[1] = 7;
transform->Translate(translation);
box1->SetObjectToWorldTransform( transform.GetPointer() );
box1->ComputeBoundingBox();
BoxType::BoundingBoxType::Pointer box1BoundingBox = box1->GetBoundingBox();
BoxType::BoundingBoxType::BoundsArrayType box1Bounds = box1BoundingBox->GetBounds();
if ( itk::Math::NotAlmostEquals( box1Bounds[0], 7.0 ) || itk::Math::NotAlmostEquals( box1Bounds[2], 7.0 ) ||
itk::Math::NotAlmostEquals( box1Bounds[1], 8.0 ) || itk::Math::NotAlmostEquals( box1Bounds[3], 8.0 ) )
{
std::cout << "Box1 - Bounding box Error"<<std::endl;
std::cout << " Expecting a bounding box of [7 8 7 8]" << std::endl;
std::cout << " But received one of " << box1Bounds << std::endl;
return EXIT_FAILURE;
}
//Now generate an imageMaskSpatial Object from box1
//Should have the same bounding box. withing pixelation bounds
typedef itk::Image<unsigned char, 2> ImageType;
typedef itk::ImageMaskSpatialObject<2> ImageMaskSpatialObjectType;
typedef itk::SpatialObjectToImageFilter<
BoxType, ImageType > SpatialObjectToImageFilterType;
SpatialObjectToImageFilterType::Pointer imageFilter =
SpatialObjectToImageFilterType::New();
itk::Size<2> size;
size.Fill(10);
// The SpatialObjectToImageFilter requires that the user defines the grid
// parameters of the output image. This includes the number of pixels along
// each dimension, the pixel spacing, image direction and
imageFilter->SetSize( size );
double origin[2];
origin[0] = 5;
origin[1] = 5;
imageFilter->SetOrigin( origin );
ImageType::SpacingType spacing;
spacing[0] = 5.0 / size[0];
spacing[1] = 5.0 / size[1];
imageFilter->SetSpacing( spacing );
imageFilter->SetInsideValue(255); // white
imageFilter->SetOutsideValue( 0 );
imageFilter->SetInput(box1);
imageFilter->Update();
ImageMaskSpatialObjectType::Pointer maskSpatialObject = ImageMaskSpatialObjectType::New();
maskSpatialObject->SetImage(imageFilter->GetOutput());
maskSpatialObject->ComputeBoundingBox();
ImageMaskSpatialObjectType::BoundingBoxType::Pointer maskBoundingBox = maskSpatialObject->GetBoundingBox();
ImageMaskSpatialObjectType::BoundingBoxType::BoundsArrayType maskBounds = maskBoundingBox->GetBounds();
//Test a few points...
ImageMaskSpatialObjectType::PointType point;
std::cout << "Mask -- Bounds : " << maskBounds << std::endl;
point[0] = 0;point[1] = 0;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 6;point[1] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 7;point[1] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 8;point[1] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 8;point[1] = 8;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
point[0] = 9;point[1] = 7;
std::cout << " " << point << " isInside? : " << maskSpatialObject->IsInside(point) << std::endl;
if( itk::Math::NotAlmostEquals(maskBounds[0], 7.0)
|| itk::Math::NotAlmostEquals(maskBounds[1], 8.5)
|| itk::Math::NotAlmostEquals(maskBounds[2], 7.0)
|| itk::Math::NotAlmostEquals(maskBounds[3], 8.5))
{
std::cout << "[FAILED] " << std::endl;
std::cout << "Test returned : " << maskSpatialObject->GetBoundingBox()->GetBounds() << std::endl;
std::cout << "Instead of : [7, 8.5, 7, 8.5]" << std::endl;
return EXIT_FAILURE;
}
std::cout << "[Passed] -- 2D test" << std::endl;
return EXIT_SUCCESS;
}
} //end empty namespace
int itkImageMaskSpatialObjectTest4(int, char* [])
{
if (Test3dImageMask() == EXIT_FAILURE)
{
return EXIT_FAILURE;
}
if (Test2dImageMask() == EXIT_FAILURE)
{
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}
|
