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/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkSignedDanielssonDistanceMapImageFilter_hxx
#define itkSignedDanielssonDistanceMapImageFilter_hxx
#include "itkSignedDanielssonDistanceMapImageFilter.h"
#include "itkProgressAccumulator.h"
#include "itkBinaryBallStructuringElement.h"
#include "itkBinaryDilateImageFilter.h"
#include "itkUnaryFunctorImageFilter.h"
namespace itk
{
/**
* Constructor
*/
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::SignedDanielssonDistanceMapImageFilter()
{
this->SetNumberOfRequiredOutputs(3);
// distance map
this->SetNthOutput( 0,
static_cast< OutputImageType* >( this->MakeOutput( 0 ).GetPointer() ) );
// voronoi map
this->SetNthOutput( 1,
static_cast< VoronoiImageType* >( this->MakeOutput( 1 ).GetPointer() ) );
// distance vectors
this->SetNthOutput( 2,
static_cast< VectorImageType* >( this->MakeOutput( 2 ).GetPointer() ) );
//Default values
this->m_SquaredDistance = false; //Should we remove this ?
//doesn't make sense in a SignedDaniel
this->m_UseImageSpacing = true;
this->m_InsideIsPositive = false;
}
/** This is overloaded to create the VectorDistanceMap output image */
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
typename
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >::DataObjectPointer
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::MakeOutput(DataObjectPointerArraySizeType idx)
{
if ( idx == 1 )
{
return VoronoiImageType::New().GetPointer();
}
if ( idx == 2 )
{
return VectorImageType::New().GetPointer();
}
return Superclass::MakeOutput(idx);
}
/**
* Return the distance map Image pointer
*/
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
typename
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >::OutputImageType *
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::GetDistanceMap(void)
{
return dynamic_cast< OutputImageType * >(
this->ProcessObject::GetOutput(0) );
}
/**
* Return Closest Points Map
*/
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
typename
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >::VoronoiImageType *
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::GetVoronoiMap(void)
{
return dynamic_cast< VoronoiImageType * >(
this->ProcessObject::GetOutput(1) );
}
/**
* Return the distance vectors
*/
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
typename
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >::VectorImageType *
SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::GetVectorDistanceMap(void)
{
return dynamic_cast< VectorImageType * >(
this->ProcessObject::GetOutput(2) );
}
/**
* Compute Distance and Voronoi maps by calling
* DanielssonDistanceMapImageFilter twice.
*/
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
void SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::GenerateData()
{
//Set up mini pipeline filter
typename ProgressAccumulator::Pointer progress = ProgressAccumulator::New();
progress->SetMiniPipelineFilter(this);
typedef DanielssonDistanceMapImageFilter<
InputImageType, OutputImageType, VoronoiImageType > FilterType;
typename FilterType::Pointer filter1 = FilterType::New();
typename FilterType::Pointer filter2 = FilterType::New();
filter1->SetUseImageSpacing(m_UseImageSpacing);
filter2->SetUseImageSpacing(m_UseImageSpacing);
filter1->SetSquaredDistance(m_SquaredDistance);
filter2->SetSquaredDistance(m_SquaredDistance);
//Invert input image for second Danielsson filter
typedef typename InputImageType::PixelType InputPixelType;
typedef Functor::InvertIntensityFunctor< InputPixelType > FunctorType;
typedef UnaryFunctorImageFilter< InputImageType,
InputImageType,
FunctorType > InverterType;
typename InverterType::Pointer inverter = InverterType::New();
inverter->SetInput( this->GetInput() );
//Dilate the inverted image by 1 pixel to give it the same boundary
//as the uninverted input.
typedef BinaryBallStructuringElement<
InputPixelType,
InputImageDimension > StructuringElementType;
typedef BinaryDilateImageFilter<
InputImageType,
InputImageType,
StructuringElementType > DilatorType;
typename DilatorType::Pointer dilator = DilatorType::New();
StructuringElementType structuringElement;
structuringElement.SetRadius(1); // 3x3 structuring element
structuringElement.CreateStructuringElement();
dilator->SetKernel(structuringElement);
dilator->SetDilateValue(1);
filter1->SetInput( this->GetInput() );
dilator->SetInput( inverter->GetOutput() );
filter2->SetInput( dilator->GetOutput() );
//Subtract Distance maps results of the two Danielsson filters
typedef SubtractImageFilter< OutputImageType, OutputImageType,
OutputImageType > SubtracterType;
typename SubtracterType::Pointer subtracter = SubtracterType::New();
if ( m_InsideIsPositive )
{
subtracter->SetInput1( filter2->GetDistanceMap() );
subtracter->SetInput2( filter1->GetDistanceMap() );
}
else
{
subtracter->SetInput2( filter2->GetDistanceMap() );
subtracter->SetInput1( filter1->GetDistanceMap() );
}
subtracter->Update();
filter1->Update();
filter2->Update();
// Register progress
progress->RegisterInternalFilter(filter1, .5f);
// Graft outputs
this->GraftNthOutput( 0, subtracter->GetOutput() );
// we must use not use this->GetOutput method because the
// output's are of different types then ImageSource
this->GraftNthOutput( 1, filter1->GetVoronoiMap() );
this->GraftNthOutput( 2, filter1->GetVectorDistanceMap() );
}
// end GenerateData()
/**
* Print Self
*/
template< typename TInputImage, typename TOutputImage, typename TVoronoiImage >
void SignedDanielssonDistanceMapImageFilter< TInputImage, TOutputImage, TVoronoiImage >
::PrintSelf(std::ostream & os, Indent indent) const
{
Superclass::PrintSelf(os, indent);
os << indent << "Signed Danielson Distance: " << std::endl;
os << indent << "Use Image Spacing : " << m_UseImageSpacing << std::endl;
os << indent << "Squared Distance : " << m_SquaredDistance << std::endl;
os << indent << "Inside is positive : " << m_InsideIsPositive << std::endl;
}
} // end namespace itk
#endif
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