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/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#include "itkIsoContourDistanceImageFilter.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkShiftScaleImageFilter.h"
#include "itkMultiplyImageFilter.h"
#include "itkMath.h"
#include "itkCommand.h"
// For debugging
namespace{
// The following class is used to support callbacks
// on the filter in the pipeline that follows later
class ShowProgressObject
{
public:
ShowProgressObject(itk::ProcessObject* o)
{m_Process = o;}
void ShowProgress()
{std::cout << "Progress " << m_Process->GetProgress() << std::endl;}
itk::ProcessObject::Pointer m_Process;
};
// simple signed distance function
template <typename TPoint>
double
SimpleSignedDistance( const TPoint & p )
{
TPoint center;
center.Fill( 50 );
double radius = 19.5;
double accum = 0.0;
for( unsigned int j = 0; j < TPoint::PointDimension; j++ )
{
accum += itk::Math::sqr( p[j] - static_cast< double >( center[j] ) );
}
accum = std::sqrt( accum );
return ( accum - radius );
}
}
int itkIsoContourDistanceImageFilterTest(int, char* [] )
{
const unsigned int ImageDimension = 2;
typedef float PixelType;
typedef itk::Image<PixelType,ImageDimension> ImageType;
typedef itk::Image<unsigned char,ImageDimension> OutputImageType;
typedef itk::Point<double,ImageDimension> PointType;
// Fill an input image with simple signed distance function
ImageType::Pointer image = ImageType::New();
ImageType::SizeType size;
size.Fill( 128 );
ImageType::RegionType region( size );
image->SetRegions( region );
image->Allocate();
typedef itk::ImageRegionIteratorWithIndex<ImageType> Iterator;
Iterator iter( image, region );
iter.GoToBegin();
while( !iter.IsAtEnd() )
{
PointType point;
image->TransformIndexToPhysicalPoint( iter.GetIndex(), point );
iter.Set( SimpleSignedDistance( point ) );
++iter;
}
// Squash up the level sets by mulitplying with a scalar
typedef itk::ShiftScaleImageFilter<ImageType,ImageType> MultiplierType;
MultiplierType::Pointer multiplier = MultiplierType::New();
multiplier->SetInput( image );
multiplier->SetScale( 0.5 );
//multiplier->SetShift( 0.0 );
// Set up image filter
typedef itk::IsoContourDistanceImageFilter<ImageType,ImageType> IsoContourType;
IsoContourType::Pointer isocontour = IsoContourType::New();
isocontour->SetInput( multiplier->GetOutput() );
isocontour->SetFarValue(10);
// isocontour->SetNumberOfThreads(8);
if( itk::Math::NotAlmostEquals( isocontour->GetFarValue(), 10 ) )
{
std::cout << "isocontour->GetFarValue() != 10" << std::endl;
return EXIT_FAILURE;
}
ShowProgressObject progressWatch(isocontour);
itk::SimpleMemberCommand<ShowProgressObject>::Pointer command;
command = itk::SimpleMemberCommand<ShowProgressObject>::New();
command->SetCallbackFunction(&progressWatch,
&ShowProgressObject::ShowProgress);
isocontour->AddObserver( itk::ProgressEvent(), command);
// For debugging
typedef itk::RescaleIntensityImageFilter<
ImageType,
OutputImageType > CastFilterType;
CastFilterType::Pointer caster = CastFilterType::New();
caster->SetInput(isocontour->GetOutput());
try
{
caster->Update();
}
catch (itk::ExceptionObject &err)
{
(&err)->Print(std::cerr);
return EXIT_FAILURE;
}
// Create narrowband
typedef IsoContourType::BandNodeType BandNodeType;
typedef IsoContourType::NarrowBandType NarrowBandType;
NarrowBandType::Pointer band = NarrowBandType::New();
// Create nodes
BandNodeType node;
iter.GoToBegin();
while (!iter.IsAtEnd())
{
if (itk::Math::abs(iter.Get()) < 5)
{
node.m_Index=iter.GetIndex();
band->PushBack(node);
}
++iter;
}
// Run isocontour with narrowband
isocontour->NarrowBandingOn();
// isocontour->SetNumberOfThreads(8);
isocontour->SetNarrowBand(band.GetPointer());
try
{
isocontour->Update();
}
catch (itk::ExceptionObject &err)
{
(&err)->Print(std::cerr);
return EXIT_FAILURE;
}
// Check if inside/outside points remain the same after reinitialization
typedef itk::MultiplyImageFilter<ImageType,ImageType,ImageType> CheckerType;
CheckerType::Pointer checker = CheckerType::New();
checker->SetInput1( image );
checker->SetInput2( isocontour->GetOutput() );
checker->Update();
typedef itk::MinimumMaximumImageCalculator<ImageType> CalculatorType;
CalculatorType::Pointer calculator = CalculatorType::New();
calculator->SetImage( checker->GetOutput() );
calculator->Compute();
double minValue = calculator->GetMinimum();
double maxValue = calculator->GetMaximum();
std::cout << "Min. product = " << minValue << std::endl;
std::cout << "Max. product = " << maxValue << std::endl;
if ( minValue < 0.0 )
{
std::cout << "Inside/Outside mismatch at ";
std::cout << calculator->GetIndexOfMinimum() << std::endl;
std::cout << "Test failed" << std::endl;
return EXIT_FAILURE;
}
// Exercise other member functions
isocontour->Print( std::cout );
// Exercise the narrowband version
isocontour->SetLevelSetValue( 1.0 );
isocontour->SetLevelSetValue( 0.0 );
isocontour->NarrowBandingOff();
isocontour->Update();
std::cout << "Level set value = " << isocontour->GetLevelSetValue() << std::endl;
std::cout << "Narrow banding = " << isocontour->GetNarrowBanding() << std::endl;
// We will use the output narrowband from the last run as the input narrowband
//isocontour->SetInputNarrowBand( nodes );
//isocontour->Update();
std::cout << "Test passed" << std::endl;
return EXIT_SUCCESS;
}
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