File: itkFastMarchingUpwindGradientBaseTest.cxx

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/


#include "itkFastMarchingUpwindGradientImageFilterBase.h"
#include "itkFastMarchingReachedTargetNodesStoppingCriterion.h"
#include "itkTextOutput.h"
#include "itkSimpleFilterWatcher.h"
#include "itkMath.h"

//namespace{
//// The following class is used to support callbacks
//// on the filter in the pipeline that follows later
//class ShowProgressObject
//{
//public:
//  ShowProgressObject(itk::ProcessObject* o)
//    {m_Process = o;}
//  void ShowProgress()
//    {std::cout << "Progress " << m_Process->GetProgress() << std::endl;}
//  itk::ProcessObject::Pointer m_Process;
//};
//}

int itkFastMarchingUpwindGradientBaseTest(int, char* [] )
{

  itk::OutputWindow::SetInstance(itk::TextOutput::New().GetPointer());

  // create a fastmarching object
  typedef float PixelType;
  const unsigned Dimension = 2;

  typedef itk::Image< PixelType, Dimension > FloatImageType;

  typedef itk::FastMarchingReachedTargetNodesStoppingCriterion< FloatImageType, FloatImageType >
      CriterionType;

  CriterionType::Pointer criterion = CriterionType::New();

  typedef itk::FastMarchingUpwindGradientImageFilterBase<
      FloatImageType, FloatImageType > FloatFMType;

  FloatFMType::Pointer marcher = FloatFMType::New();

//   ShowProgressObject progressWatch(marcher);
//   itk::SimpleMemberCommand<ShowProgressObject>::Pointer command;
//   command = itk::SimpleMemberCommand<ShowProgressObject>::New();
//   command->SetCallbackFunction(&progressWatch,
//                                &ShowProgressObject::ShowProgress);
//   marcher->AddObserver( itk::ProgressEvent(), command);

  itk::SimpleFilterWatcher MarcherWatcher( marcher );

  typedef FloatFMType::NodeType     NodeType;
  typedef FloatFMType::NodePairType NodePairType;

  typedef FloatFMType::NodePairContainerType NodePairContainerType;

  // setup alive points
  NodePairContainerType::Pointer AlivePoints = NodePairContainerType::New();

  FloatImageType::OffsetType offset0 = {{28,35}};

  itk::Index<2> index;
  index.Fill(0);

  AlivePoints->push_back( NodePairType( index + offset0, 0. ) );
  AlivePoints->push_back( NodePairType( index + offset0, 42. ) );

  marcher->SetAlivePoints( AlivePoints );

  // setup trial points
  NodePairContainerType::Pointer TrialPoints = NodePairContainerType::New();

  index.Fill(0);
  index += offset0;

  index[0] += 1;
  TrialPoints->push_back( NodePairType( index, 1. ) );

  index[0] -= 1;
  index[1] += 1;
  TrialPoints->push_back( NodePairType( index, 1. ) );

  index[0] -= 1;
  index[1] -= 1;
  TrialPoints->push_back( NodePairType( index, 1. ) );

  index[0] += 1;
  index[1] -= 1;
  TrialPoints->push_back( NodePairType( index, 1. ) );

  index.Fill( 300 ); // this node is out of ranage
  TrialPoints->push_back( NodePairType( index, 42. ) );

  marcher->SetTrialPoints( TrialPoints );

  // specify the size of the output image
  FloatImageType::SizeType size = {{64,64}};
  marcher->SetOutputSize( size );

  // setup a speed image of ones
  FloatImageType::Pointer speedImage = FloatImageType::New();
  FloatImageType::RegionType region;
  region.SetSize( size );
  speedImage->SetLargestPossibleRegion( region );
  speedImage->SetBufferedRegion( region );
  speedImage->Allocate();

  itk::ImageRegionIterator<FloatImageType>
    speedIter( speedImage, speedImage->GetBufferedRegion() );

  while ( !speedIter.IsAtEnd() )
    {
    speedIter.Set( 1.0 );
    ++speedIter;
    }

//  speedImage->Print( std::cout );
  marcher->SetInput( speedImage );

  // check the results
  typedef FloatFMType::GradientImageType  FloatGradientImage;
  typedef FloatGradientImage::PixelType   GradientPixelType;
  FloatGradientImage::Pointer gradientOutput = marcher->GetGradientImage();
  itk::ImageRegionIterator<FloatGradientImage>
    iterator( gradientOutput, gradientOutput->GetBufferedRegion() );

  bool passed = true;

  while ( !iterator.IsAtEnd() )
    {
    FloatGradientImage::IndexType tempIndex;
    double distance;
    GradientPixelType outputPixel;

    tempIndex = iterator.GetIndex();
    tempIndex -= offset0;
    distance = 0.0;
    for ( int j = 0; j < 2; j++ )
      {
      distance += tempIndex[j] * tempIndex[j];
      }
    distance = std::sqrt( distance );

    outputPixel = iterator.Get();

    double outputPixelNorm = (double) outputPixel.GetNorm();

    if (itk::Math::AlmostEquals(distance, 0.0))
      {
      continue;
      }

    // for test to pass, gradient vectors must have norm = 1
    // (equal to the rhs of the Eikonal equation)
    // and must be oriented radially from the seed point

    double dot = 0.0;
    for ( int j = 0; j < 2; j++ )
      {
      dot += tempIndex[j] / distance * outputPixel[j];
      }

    if ( ( outputPixelNorm < 0.9999 ) ||
         ( outputPixelNorm > 1.0001 ) ||
         ( dot < 0.99 ) || ( dot > 1.01 ) )
      {
      std::cout << iterator.GetIndex() << " ";
      std::cout << outputPixelNorm << " ";
      std::cout << dot << std::endl;
      passed = false;
      }

    ++iterator;
    }

  // Set up target points.
  // The algorithm will stop when it reaches these points.
  // This point is closest to the AlivePoint:
  FloatImageType::OffsetType offset2 = {{40,40}};
  FloatImageType::OffsetType offset1 = {{50,50}};
  // This point is farthest from the AlivePoint:
  FloatImageType::OffsetType offset3 = {{0,0}};
  std::vector< FloatImageType::OffsetType > targetOffsets;
  targetOffsets.push_back( offset1 );
  targetOffsets.push_back( offset2 );
  targetOffsets.push_back( offset3 );

  std::vector< NodeType > TargetNodes;
  for( unsigned int i = 0; i < targetOffsets.size(); i++ )
    {
    TargetNodes.push_back( index + targetOffsets[i] );
    }
  criterion->SetTargetNodes( TargetNodes );

  // Stop the algorithm when ONE of the targets has been reached.
  criterion->SetTargetCondition( CriterionType::OneTarget );

  marcher->SetStoppingCriterion( criterion );

  marcher->Update();


  if ( passed )
    {
    std::cout << "Fast Marching Upwind Gradient test passed" << std::endl;
    return EXIT_SUCCESS;
    }
  else
    {
    std::cout << "Fast Marching Upwind Gradient test failed" << std::endl;
    return EXIT_FAILURE;
    }
}