File: itkHDF5ImageIOStreamingReadWriteTest.cxx

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#include "itkHDF5ImageIOFactory.h"
#include "itkIOTestHelper.h"
#include "itkPipelineMonitorImageFilter.h"
#include "itkStreamingImageFilter.h"
#include "itkGenerateImageSource.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkImageDuplicator.h"
#include "itkMath.h"

namespace itk
{
/** \class DemoImageSource
 *
 * \brief Streamable process that will generate image regions from the write requests
 *
 * We do not allocate directly the Image, because as an Image is a data and is not streamable,
 * the writer would write the image in one pass, without streaming.
 *
 * Instead, we need to set a streamable source process as the writer input.
 * This source process, 'DemoImageSource', will allocate a region of the image
 * (and set pixels values) on the fly, based on the informations
 * received from the writer requests.
 */
template< class TOutputImage >
class DemoImageSource:public GenerateImageSource< TOutputImage >
{
  public:
    /** Standard class typedefs. */
    typedef DemoImageSource                 Self;
    typedef DemoImageSource< TOutputImage > Superclass;
    typedef SmartPointer< Self >            Pointer;

    /** Method for creation through the object factory. */
    itkNewMacro(Self);

    /** Run-time type information (and related methods). */
    itkTypeMacro(DemoImageSource, GenerateImageSource);

    /** Set the value to fill the image. */
    itkSetMacro(Value, typename TOutputImage::PixelType);

  protected:
    DemoImageSource()
    {
      m_Value = NumericTraits< typename TOutputImage::PixelType >::ZeroValue();
    }
    ~DemoImageSource() ITK_OVERRIDE {}

    /** Does the real work. */
    virtual void GenerateData() ITK_OVERRIDE
      {
      TOutputImage* out = this->GetOutput();
      out->SetBufferedRegion(out->GetRequestedRegion());
      out->Allocate();
      itk::ImageRegionIteratorWithIndex<TOutputImage> it(out,out->GetRequestedRegion());
      for(it.GoToBegin(); !it.IsAtEnd(); ++it)
        {
        typename TOutputImage::IndexType idx = it.GetIndex();
        it.Set(idx[2]*100 + idx[1]*10 + idx[0]);
        }
    };

  private:
    ITK_DISALLOW_COPY_AND_ASSIGN(DemoImageSource);

    typename TOutputImage::PixelType m_Value;
};

}

template <typename TPixel>
int HDF5ReadWriteTest2(const char *fileName)
{
  // Define image type.
  typedef typename itk::Image<TPixel,3> ImageType;

  // Create a source object (in this case a constant image).
  typename ImageType::SizeType size;
  size[2] = 5;
  size[1] = 5;
  size[0] = 5;
  typename itk::DemoImageSource<ImageType>::Pointer imageSource = itk::DemoImageSource<ImageType>::New();
  imageSource->SetValue(static_cast<TPixel>(23)); // Not used.
  imageSource->SetSize(size);

  // Write image with streaming.
  typedef typename itk::ImageFileWriter<ImageType> WriterType;
  typename WriterType::Pointer writer = WriterType::New();
  typedef typename itk::PipelineMonitorImageFilter<ImageType> MonitorFilterType;
  typename MonitorFilterType::Pointer writerMonitor = MonitorFilterType::New();
  writerMonitor->SetInput(imageSource->GetOutput());
  writer->SetFileName(fileName);
  writer->SetInput(writerMonitor->GetOutput());
  writer->SetNumberOfStreamDivisions(5);
  try
    {
    writer->Write();
    }
  catch(itk::ExceptionObject &err)
    {
    std::cout << "itkHDF5ImageIOTest" << std::endl
              << "Exception Object caught: " << std::endl
              << err << std::endl;
    return EXIT_FAILURE;
    }

  // Check streaming regions.
  if (! writerMonitor->VerifyInputFilterExecutedStreaming(5))
    return EXIT_FAILURE;
  typename ImageType::RegionType expectedRegion;
  expectedRegion.SetIndex(0,0);
  expectedRegion.SetIndex(1,0);
  expectedRegion.SetSize(0,5);
  expectedRegion.SetSize(1,5);
  expectedRegion.SetSize(2,1);
  typename MonitorFilterType::RegionVectorType writerRegionVector = writerMonitor->GetUpdatedBufferedRegions();
  typename ImageType::RegionType::IndexValueType iRegion;
  for (iRegion = 0; iRegion < 5; iRegion++)
    {
    expectedRegion.SetIndex(2, iRegion );
    if (writerRegionVector[iRegion] != expectedRegion)
      {
          std::cout << "Written image region number " << iRegion << " :" << writerRegionVector[iRegion]
                    << " doesn't match expected one: " << expectedRegion << std::endl;
          return EXIT_FAILURE;
      }
    }

  // Force writer close.
  writer = typename WriterType::Pointer();

  // Read image with streaming.
  typedef typename itk::ImageFileReader<ImageType> ReaderType;
  typename ReaderType::Pointer reader = ReaderType::New();
  reader->SetFileName(fileName);
  reader->SetUseStreaming(true);
  typename MonitorFilterType::Pointer readerMonitor = MonitorFilterType::New();
  readerMonitor->SetInput(reader->GetOutput());
  typedef typename itk::StreamingImageFilter<ImageType, ImageType> StreamingFilter;
  typename StreamingFilter::Pointer streamer = StreamingFilter::New();
  streamer->SetInput(readerMonitor->GetOutput());
  streamer->SetNumberOfStreamDivisions(5);
  typename ImageType::Pointer image;
  try
    {
    streamer->Update();
    }
  catch(itk::ExceptionObject &err)
    {
    std::cout << "itkHDF5ImageIOTest" << std::endl
              << "Exception Object caught: " << std::endl
              << err << std::endl;
    return EXIT_FAILURE;
    }
  image = streamer->GetOutput();

  // Check largest possible and buffered regions.
  expectedRegion.SetIndex(0,0);
  expectedRegion.SetIndex(1,0);
  expectedRegion.SetIndex(2,0);
  expectedRegion.SetSize(0,5);
  expectedRegion.SetSize(1,5);
  expectedRegion.SetSize(2,5);
  if (image->GetLargestPossibleRegion() != expectedRegion)
    {
      std::cout << "Read image largest possible region: " << image->GetLargestPossibleRegion()
                << "n doesn't match expectedo one: " << expectedRegion << std::endl;
    }
  if (image->GetBufferedRegion() != expectedRegion)
    {
      std::cout << "Read image buffered region: " << image->GetBufferedRegion()
                << "n doesn't match expectedo one: " << expectedRegion << std::endl;
    }

  // Check image pixel values.
  itk::ImageRegionIterator<ImageType> it(image,image->GetLargestPossibleRegion());
  typename ImageType::IndexType idx;
  TPixel origValue;
  for(it.GoToBegin(); !it.IsAtEnd(); ++it)
    {
    idx = it.GetIndex();
    origValue = idx[2]*100 + idx[1]*10 + idx[0];
    if(itk::Math::NotAlmostEquals( it.Get(), origValue) )
      {
      std::cout << "Original Pixel (" << origValue
                << ") doesn't match read-in Pixel ("
                << it.Get() << std::endl;
      return EXIT_FAILURE;
      }
    }

  // Check number of streaming regions.
  if (! readerMonitor->VerifyInputFilterExecutedStreaming(5))
    return EXIT_FAILURE;

  // Check streaming regions.
  typename MonitorFilterType::RegionVectorType readerRegionVector = readerMonitor->GetUpdatedBufferedRegions();
  expectedRegion.SetIndex(0,0);
  expectedRegion.SetIndex(1,0);
  expectedRegion.SetSize(0,5);
  expectedRegion.SetSize(1,5);
  expectedRegion.SetSize(2,1);
  for (iRegion = 0; iRegion < 5; iRegion++)
    {
    expectedRegion.SetIndex(2, iRegion );
    if (readerRegionVector[iRegion] != expectedRegion)
      {
        std::cout << "Read image region number " << iRegion << " :" << readerRegionVector[iRegion]
                  << " doesn't match expected one: " << expectedRegion << std::endl;
        return EXIT_FAILURE;
      }
    }

  // Clean working directory.
  itk::IOTestHelper::Remove(fileName);

  return EXIT_SUCCESS;
}

int
itkHDF5ImageIOStreamingReadWriteTest(int ac, char * av [])
{
  std::string prefix("");
  if(ac > 1)
    {
    prefix = *++av;
    --ac;
    itksys::SystemTools::ChangeDirectory(prefix.c_str());
    }
  itk::ObjectFactoryBase::RegisterFactory(itk::HDF5ImageIOFactory::New() );

  int result(0);
  result += HDF5ReadWriteTest2<unsigned char>("StreamingUCharImage.hdf5");
  result += HDF5ReadWriteTest2<float>("StreamingFloatImage.hdf5");
  result += HDF5ReadWriteTest2<itk::RGBPixel<unsigned char> >("StreamingRGBImage.hdf5");
  return result != 0;
}